Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00075 ATGACAAGCCAAGATTCCCAGGGTTTTACTTGGCACTACACGGAGCTGGATGACCGTAATCTCGAAATCCGAGGCCGAACATTTTTCTTCGTGGTCGTGCTGTTCTCCATTATCCTTATTGTGACCCTTCTCTTCCTTTATGCTCGCTGGATCTGGAGGTATCGGGGCCAACATCCCACCACCTACCATCCCTACGGAGAGCGCCTCGCGCCGCCTCCTCCTCTGCCACAGGGCCTCGACCCTGCTTCGATCAAGAATTTGCCTATAGTTTTGCACCAAAGGACTTCGGCCGGCAACAGTAAATTAGAGGAAACAGAGTGCTGTATTTGCCTCGGCACGTTCAAAGATGGAGAGAAATTGAAGGTTTTACCCGGCTGTGACCACAGCTTCCATTGTGAGTGTGTTGATAGGTGGCTTTCCAATCACTCTAGTTGTCCTCTCTGTAGATCTTCTCTCAAGGTTCATTCTTCCTTTCCCAAGATTTTGATTCAAGAACCACCCAATCGAATCAACATTCCCCTGTAG 525 0.4933 MTSQDSQGFTWHYTELDDRNLEIRGRTFFFVVVLFSIILIVTLLFLYARWIWRYRGQHPTTYHPYGERLAPPPPLPQGLDPASIKNLPIVLHQRTSAGNSKLEETECCICLGTFKDGEKLKVLPGCDHSFHCECVDRWLSNHSSCPLCRSSLKVHSSFPKILIQEPPNRINIPL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00075 174 SUPERFAMILY RING/U-box 101 156 - -
Accr4g00075 174 CDD RING-H2_EL5-like 106 149 - -
Accr4g00075 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Accr4g00075 174 FunFam RING-H2 finger protein ATL66 71 154 - -
Accr4g00075 174 SMART ring_2 107 148 IPR001841 -
Accr4g00075 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Accr4g00075 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 155 - -
Accr4g00075 174 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00075 Accr-Chr4 949867 950391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00075 4 157 C3H Transcription Factor Family AT3G11110 46.203 8.72e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00075 - - gmx:100794927 239.58