Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00070 ATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGAACGACACCATGGAAAGCGAGTCTGCAAAGCGGAACTTGAGCGACTCTTCGGTTTTGCTGGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAAAGAGGTGGAAGAGAAGGGCTGCGGCATCAACGCGGCAAGCTTATGGTATGGTAGAAGAATTGGATCGAAGAAGATGGGGTGGGAGAAGAGAACACCCCTCATGATTGCGTCCTCATTTGGAAGTACTAGAGTGTTGAAGTACATAATTGAGACTGGCAGGGTTGATGTGAACAAAACCTGTGGTTCTGATATGGCCACGGCTCTTCACTCTGCTGTTGTTGGTGGCTCTCACTCTTCACTTGACGTTGTTCAGCTCTTGCTTGATGCTGGAGCCGATGCTGATTGCCTTGATGCAAGTGGAAATAAGCCTGTCAATTTAATTGCCCCTGCCTTCAATTCCTTCTCCAATGCAAGAAGAAAGGCCATAGAGTTGTTGCTAAGAGGTGGGCAAGGAGATGGAATCATCAGTCAGGAGATGGAGCAACCTAAATTTGCAGTGTCTGCTTTGTCCTCAAAAGAAGGAACTGAGAAAAAAGAATATCCTGTTGATGTACCATTGCCTGACATAAACAGTGGTATATACGGAACGGACGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCATGTTCAAGGGCTTATTCACATGATTGGACAGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCACGTAAATACCCTTACAGCTGCGTCCCCTGCCCTGAGTTTCGCAAGGGCACATGCCAGAAGGGAGATGCTTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTCCATCCTGCTCAATACAGAACTAAGCTTTGCAAGGATGAGATTGGATGCACTAGGAAAGTTTGTTTTTTTGCTCATAAAACTGAAGAGCTGCGTCCTGTGTATGCTTCTACTGGTTCTGCTGTGCCTTCTCCAAAGTCCTTGGCTAGTAGTGTACTTGATATGACTTCAATGAGTCCTTTGGCTCTTAGTTCCTCATCTTTGCCTATGTCAACTGTTTCAACTCCGCCTATGTCTCCCATCGCAGCTTCATCACCTCCTAAGAGTGGAGGCTTTTGGCAGAATCAAAGAAAACTCACCCCACCATCATTGCAGCTCCCAGGGAGCCGGCTGAAGGCCACCTTGAGTGCCCGGGATCTGGATATGGATATGGAGCTGCTTGGACTGCAAAGTCCTGCAAACCAGCATCAGCAGCAATTGGCTCGAATCTCCTCCATGTCCTTACGAAACAAAGACTTCGGTAGGATCAGTGATTTGAACCCCACGAACCTTGATGACCTTCTAGGATCTGTTGATCATTTTGGATCACCTCAATTACATAGCCTTTCAGCACAACTCTCGTTGTCTAGTCAATTGAACTCGCCAAGTGGGCTTCAGATGCGCCAAAACATGAGCCCCCTTCGTGCAAGCTATCCAACCAACATATCTTCCTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCATCAGCTGCTGTGGCGGCAGCAGTGATGAATTCTAGGTCTGCTGCCTTTGCCAAGAGAAGCCAGAGTTTTGTTGATCGCGGTGAAGCAGTGAGCCACCACCATCATCTCAGACATTCTTCGCCTCCCCGCCCTTCCTGTAGGGCGTCCTCTGCTCTTTCAGATTGGAGTTCTCCTGATGGAAAGTTGGATTGGGGCATGAATGGACATGAAATGAACATGCTGAAGAAATCTGCTTCATTTGGGTTTAGGAATAATGGGGTTTCTGCCACCTCCATGGCTCCATCAGAACACAGTGAACCAGATGTGTCATGGGTTCATTCCTTGGTTAAAGATGTGCCCTCCGAAGAGTTGTGTTGCTGA 1929 0.4774 MCSGSKSKLSPSNDTMESESAKRNLSDSSVLLELSASDDLEAFRKEVEEKGCGINAASLWYGRRIGSKKMGWEKRTPLMIASSFGSTRVLKYIIETGRVDVNKTCGSDMATALHSAVVGGSHSSLDVVQLLLDAGADADCLDASGNKPVNLIAPAFNSFSNARRKAIELLLRGGQGDGIISQEMEQPKFAVSALSSKEGTEKKEYPVDVPLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKTEELRPVYASTGSAVPSPKSLASSVLDMTSMSPLALSSSSLPMSTVSTPPMSPIAASSPPKSGGFWQNQRKLTPPSLQLPGSRLKATLSARDLDMDMELLGLQSPANQHQQQLARISSMSLRNKDFGRISDLNPTNLDDLLGSVDHFGSPQLHSLSAQLSLSSQLNSPSGLQMRQNMSPLRASYPTNISSSQVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFVDRGEAVSHHHHLRHSSPPRPSCRASSALSDWSSPDGKLDWGMNGHEMNMLKKSASFGFRNNGVSATSMAPSEHSEPDVSWVHSLVKDVPSEELCC 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00070 642 Gene3D - 3 185 IPR036770 -
Accr4g00070 642 Gene3D - 264 326 - -
Accr4g00070 642 PANTHER UNKEMPT FAMILY MEMBER 33 635 IPR045234 -
Accr4g00070 642 FunFam Zinc finger CCCH domain-containing protein 66 221 289 - -
Accr4g00070 642 SUPERFAMILY Ankyrin repeat 24 150 IPR036770 -
Accr4g00070 642 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Accr4g00070 642 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Accr4g00070 642 MobiDBLite consensus disorder prediction 367 387 - -
Accr4g00070 642 MobiDBLite consensus disorder prediction 1 26 - -
Accr4g00070 642 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Accr4g00070 642 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 288 IPR000571 GO:0046872
Accr4g00070 642 Pfam Ankyrin repeats (3 copies) 66 139 IPR002110 GO:0005515
Accr4g00070 642 SMART ANK_2a 108 140 IPR002110 GO:0005515
Accr4g00070 642 SMART ANK_2a 73 103 IPR002110 GO:0005515
Accr4g00070 642 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Accr4g00070 642 MobiDBLite consensus disorder prediction 553 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00070 Accr-Chr4 876087 878015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00070 11 634 C2H2 Transcription Factor Family AT5G12850 40.768 4.03e-140 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr4g00070 Ank_2 1.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00070 - - gmx:100783376 811.216