Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00065 ATGAACTCTGCCAATGACCATGATCACCCACCGCTTCTTTCGGACTCCTCCGACACCGACACCGACTCCGACCACGGGCAGTCTAGCTCAGTGCTCCTTCGCCACACGGACCTCTCAGACTCCATTTTCAAATCTTATTTCGAGTTCATCAGCCACGGCCAGTCATCGGCAACCGCTGCTGACCTTTCAAAGATCCAGTCTTTTCTCACATCCTCCTCCTCCGGCGCTCTATCATGCTTGATATGCCTCGAACGCATCAGACCCTCCGACCCCACTTGGTCCTGCACCTCCCTCTGCTACGCCGTCTTCCATCTTTTCTGCATACAGAGTTGGGCACGCCAGGCATCCGACCTCGCTGCCGCACGCGTGGCAACGCGCCTACCTGTTACAGCTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCTAAATGCAGGGCTGAATACTCCAAAATTCAGATCCCTAAATCCTATGTGTGCTTCTGTGGAAAATTGGACAACCCCCCTAGTGATGATCCCTGGGTACTGCCACATTCTTGTGGTGAGGTTTGTAATAGGCCGTTGAAGAACAACTGCGGGCATTATTGCTTGTTGCTGTGCCATCCAGGGCCATGCCCATCGTGCCCAAAACTTGTCAAGTCTCGATGCTTTTGCGGGTCACTTCAAGACGTTCGCAGATGCGGGTATAAGGAATTTTCCTGTAATAATCCTTGTTCGAAGCTCTTGGACTGTGGTGTTCACAGGTGTTCTGAGATCTGTCATGTTGGCCCCTGCCCACCTTGCCGAGCCCGTGGAGTTTTTAAGTGCCAATGCGGGCAGAAAAAGGAGGAAAGGGAGTGTTGCGATCGCATTTTTCAATGTGATGCTCCATGCGAGAAGGTTCTTAGCTGCGGGAAGCACATTTGTCAGAAAGGATGCCATTCGGGTGAGTGTGGCGAGTGCCCTTTTCAGGGTAAGAGAACGTGCCCGTGCGGGAAAAGGATTTATAAAGACATTCCTTGTGATGCCGTGGTACAATTGTGTGGAGCGACTTGCGATAAAATGCTCAGTTGCGGATATCACAAGTGCCCTGAGAGATGCCACCGTGGGCAATGCATCGGGACCTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGAGGTCCCTTGCCATCAAGAGTTGTCATGCGAAAGGAAATGCCAGAGGATACGTGATTGTGGGAGGCATCCATGTAAGCGTCGCTGTTGTGATGGTGACTGCCCTCCATGTTCAGAGATATGTGGCAAGAGGCTTCGATGTAAAAACCATAAATGTCCTTCTCCATGCCACAGGGGTCCCTGTGCTCCATGTCCAATAATGGTGACAATCTCATGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGCCCCAAGCGTTGCCCTATTACTCCTTTATGCAGGCATGCACCAAATTCCAAGCCTCACAAATGTCATTACGGAGCCTGTCCTTCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCTTGTGGCCACAAATGCAAATTAAGGTGTCATGGTTCAAAACCTCCTCCTAATCCAGAGTTTACACTGAAGCCAAAGAAAAAGAAGATAATTAAGCAGAGTGAAGGTGTTCCTGGCACTCCCTGCCCTCCTTGTCCTGAATTTGTATGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTGATAGATCGCAATTTCGCTGTGAAAATTTGTGTGGAAACCCTCTGCCATGCAGTAATCATTTTTGTACTAAGACCTGCCATGCCTTAGAGACACTGTCTTCCTTGAACCAGCTACAGGGAAGTGAACGTTGTGAAGATTGTTGTCTTCCATGCCAAAAGGTAAGAGTGCCTAAGTGTCCACATCACTGCCCTCAACCTTGCCATCCTGGAGAATGCCCTCCATGCAAAGTGCTCATTAAACGGTCTTGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATCTACTACAACAGCTTGTCTGCCAAGGATCAAGAGACCGTTCGATCATGCCGTGGGCCTTGTCACAGAAAGCTGCCACATTGTACACATCTGTGCCCACATTCTTGTCATCCTGGTCAATGCCCATACCCTGATAAATGTTCCAAAAAGGTCACTGTTCGTTGCAAATGCCAAACTCTGAAGAAAGAGTGGCTTTGTCAAGATGTTCAAGCAGCCTATCATCGTGATGGTTGCCATCCCAGGGATATACCAAAAAATCACTTCGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAAGTTTTTGAGTCAGAGCTGCAATTACGTAAATCCCAAGTTACGGAGGAAAAGGCACCCGAGGCTGGAAAGCCATTACCAAAACGAAAGAGAAGGCGGGAACGCATACAGGAGCCCAGCCAATCAACAAAACTGCAGAAAATTGCAGCTACTACGAAGCGGCTTCTTCTATTTGTCTTTCTTTTTGTGGGCCTTCTTGCTGCTGTATATTATGGTTACGAGAGTCTTTTATGGCTCAATGATTGGATGAACGAAGTTGATGAGCGAAGACACAGAAGATATTCTCGAATCTCGTAA 2634 0.4856 MNSANDHDHPPLLSDSSDTDTDSDHGQSSSVLLRHTDLSDSIFKSYFEFISHGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCTSLCYAVFHLFCIQSWARQASDLAAARVATRLPVTADKAAESATWNCPKCRAEYSKIQIPKSYVCFCGKLDNPPSDDPWVLPHSCGEVCNRPLKNNCGHYCLLLCHPGPCPSCPKLVKSRCFCGSLQDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVFKCQCGQKKEERECCDRIFQCDAPCEKVLSCGKHICQKGCHSGECGECPFQGKRTCPCGKRIYKDIPCDAVVQLCGATCDKMLSCGYHKCPERCHRGQCIGTCRTVVRKSCRCGSLKKEVPCHQELSCERKCQRIRDCGRHPCKRRCCDGDCPPCSEICGKRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKRCPITPLCRHAPNSKPHKCHYGACPSCRLPCEEEYPCGHKCKLRCHGSKPPPNPEFTLKPKKKKIIKQSEGVPGTPCPPCPEFVWRSCVGQHIGAERMMVCSDRSQFRCENLCGNPLPCSNHFCTKTCHALETLSSLNQLQGSERCEDCCLPCQKVRVPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSMVHVFECIYYNSLSAKDQETVRSCRGPCHRKLPHCTHLCPHSCHPGQCPYPDKCSKKVTVRCKCQTLKKEWLCQDVQAAYHRDGCHPRDIPKNHFGIGLIPCNSDCKSKVQVFESELQLRKSQVTEEKAPEAGKPLPKRKRRRERIQEPSQSTKLQKIAATTKRLLLFVFLFVGLLAAVYYGYESLLWLNDWMNEVDERRHRRYSRIS 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00065 877 SUPERFAMILY RING/U-box 77 154 - -
Accr4g00065 877 ProSitePatterns Zinc finger PHD-type signature. 79 145 IPR019786 -
Accr4g00065 877 SMART znfxneu3 351 371 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 599 635 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 517 562 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 431 450 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 297 316 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 641 659 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 404 423 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 704 725 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 244 263 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 192 210 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 SMART znfxneu3 488 509 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 CDD NF-X1-zinc-finger 180 228 - -
Accr4g00065 877 ProSiteProfiles Zinc finger RING-type profile. 79 146 IPR001841 -
Accr4g00065 877 CDD RING-CH-C4HC3_NFXL1 77 146 - -
Accr4g00065 877 CDD NF-X1-zinc-finger 341 390 - -
Accr4g00065 877 CDD NF-X1-zinc-finger 394 442 - -
Accr4g00065 877 CDD NF-X1-zinc-finger 287 334 - -
Accr4g00065 877 CDD NF-X1-zinc-finger 629 670 - -
Accr4g00065 877 MobiDBLite consensus disorder prediction 1 28 - -
Accr4g00065 877 MobiDBLite consensus disorder prediction 793 822 - -
Accr4g00065 877 Pfam NF-X1 type zinc finger 643 658 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 425 449 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 705 723 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 351 369 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 297 315 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 498 508 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 192 209 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 599 609 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 404 422 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 Pfam NF-X1 type zinc finger 244 262 IPR000967 GO:0005634|GO:0008270
Accr4g00065 877 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 52 511 IPR034078 GO:0003700
Accr4g00065 877 CDD NF-X1-zinc-finger 234 282 - -
Accr4g00065 877 CDD NF-X1-zinc-finger 421 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00065 Accr-Chr4 779314 785442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Accr4g00065 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00065 K15683 - gmx:100799540 1490.32