Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00062 ATGAAACCATCCCCAGCATCGGGTGGCCGATTGGACTGGCCCGTCCCCAACATGAACTCTGCCAATGACCATGATCACCCACCGCTTCTTTCGGACTCCTCCGACACCGACACCGACTCCGACCACGGGCAGTCTAGCTCAGTGCTCCTTCGCCACACGGACCTCTCAGACTCCATTTTCAAATCTTATTTCGAGTTCATCAGCCACGGCCAGTCATCGGCAACCGCTGCTGACCTTTCAAAGATCCAGTCTTTTCTCACATCCTCCTCCTCCGGCGCTCTATCATGCTTGATATGCCTCGAACGCATCAGACCCTCCGACCCCACTTGGTCCTGCACCTCCCTCTGCTACGCCGTCTTCCATCTTTTCTGCATACAGAGTTGGGCACGCCAGGCATCCGACCTCGCTGCCGCACGCGTGGCAACGCGCCTACCTGTTACAGCTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCTAAATGCAGGGCTGAATACTCCAAAATTCAGATCCCTAAATCCTATGTGTGCTTCTGTGGAAAATTGGACAACCCCCCTAGTGATGATCCCTGGGTACTGCCACATTCTTGTGGTGAGGTTTGTAATAGGCCGTTGAAGAACAACTGCGGGCATTATTGCTTGTTGCTGTGCCATCCAGGGCCATGCCCATCGTGCCCAAAACTTGTCAAGTCTCGATGCTTTTGCGGGTCACTTCAAGACGTTCGCAGATGCGGGTATAAGGAATTTTCCTGTAATAATCCTTGTTCGAAGCTCTTGGACTGTGGTGTTCACAGGTGTTCTGAGATCTGTCATGTTGGCCCCTGCCCACCTTGCCGAGCCCGTGGAGTTTTTAAGTGCCAATGCGGGCAGAAAAAGGAGGAAAGGGAGTGTTGCGATCGCATTTTTCAATGTGATGCTCCATGCGAGAAGGTTCTTAGCTGCGGGAAGCACATTTGTCAGAAAGGATGCCATTCGGGTGAGTGTGGCGAGTGCCCTTTTCAGGGTAAGAGAACGTGCCCGTGCGGGAAAAGGATTTATAAAGACATTCCTTGTGATGCCGTGGTACAATTGTGTGGAGCGACTTGCGATAAAATGCTCAGTTGCGGATATCACAAGTGCCCTGAGAGATGCCACCGTGGGCAATGCATCGGGACCTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGAGGTCCCTTGCCATCAAGAGTTGTCATGCGAAAGGAAATGCCAGAGGATACGTGATTGTGGGAGGCATCCATGTAAGCGTCGCTGTTGTGATGGTGACTGCCCTCCATGTTCAGAGATATGTGGCAAGAGGCTTCGATGTAAAAACCATAAATGTCCTTCTCCATGCCACAGGGGTCCCTGTGCTCCATGTCCAATAATGGTGACAATCTCATGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGCCCCAAGCGTTGCCCTATTACTCCTTTATGCAGGCATGCACCAAATTCCAAGCCTCACAAATGTCATTACGGAGCCTGTCCTTCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCTTGTGGCCACAAATGCAAATTAAGGTGTCATGGTTCAAAACCTCCTCCTAATCCAGAGTTTACACTGAAGCCAAAGAAAAAGAAGATAATTAAGCAGAGTGAAGGTGTTCCTGGCACTCCCTGCCCTCCTTGTCCTGAATTTGTATGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTGATAGATCGCAATTTCGCTGTGAAAATTTGTGTGGAAACCCTCTGCCATGCAGTAATCATTTTTGTACTAAGACCTGCCATGCCTTAGAGACACTGTCTTCCTTGAACCAGCTACAGGGAAGTGAACGTTGTGAAGATTGTTGTCTTCCATGCCAAAAGGTAAGAGTGCCTAAGTGTCCACATCACTGCCCTCAACCTTGCCATCCTGGAGAATGCCCTCCATGCAAAGTGCTCATTAAACGGTCTTGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATCTACTACAACAGCTTGTCTGCCAAGGATCAAGAGACCGTTCGATCATGCCGTGGGCCTTGTCACAGAAAGCTGCCACATTGTACACATCTGTGCCCACATTCTTGTCATCCTGGTCAATGCCCATACCCTGATAAATGTTCCAAAAAGGTCACTGTTCGTTGCAAATGCCAAACTCTGAAGAAAGAGTGGCTTTGTCAAGATGTTCAAGCAGCCTATCATCGTGATGGTTGCCATCCCAGGGATATACCAAAAAATCACTTCGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAAGTTTTTGAGTCAGAGCTGCAATTACGTAAATCCCAAGTTACGGAGAAGGAAAAGGCACCCGAGGCTGGAAAGCCATTACCAAAACGAAAGAGAAGGCGGGAACGCATACAGGAGCCCAGCCAATCAACAAAACTGCAGAAAATTGCAGCTACTACGAAGCGGCTTCTTCTATTTGTCTTTCTTTTTGTGGGCCTTCTTGCTGCTGTATATTATGGTTACGAGAGTCTTTTATGGCTCAATGATTGGATGAACGAAGTTGATGAGCGAAGACACAGAAGATATTCTCGAATCTCGTAA 2688 0.4881 MKPSPASGGRLDWPVPNMNSANDHDHPPLLSDSSDTDTDSDHGQSSSVLLRHTDLSDSIFKSYFEFISHGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCTSLCYAVFHLFCIQSWARQASDLAAARVATRLPVTADKAAESATWNCPKCRAEYSKIQIPKSYVCFCGKLDNPPSDDPWVLPHSCGEVCNRPLKNNCGHYCLLLCHPGPCPSCPKLVKSRCFCGSLQDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVFKCQCGQKKEERECCDRIFQCDAPCEKVLSCGKHICQKGCHSGECGECPFQGKRTCPCGKRIYKDIPCDAVVQLCGATCDKMLSCGYHKCPERCHRGQCIGTCRTVVRKSCRCGSLKKEVPCHQELSCERKCQRIRDCGRHPCKRRCCDGDCPPCSEICGKRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKRCPITPLCRHAPNSKPHKCHYGACPSCRLPCEEEYPCGHKCKLRCHGSKPPPNPEFTLKPKKKKIIKQSEGVPGTPCPPCPEFVWRSCVGQHIGAERMMVCSDRSQFRCENLCGNPLPCSNHFCTKTCHALETLSSLNQLQGSERCEDCCLPCQKVRVPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSMVHVFECIYYNSLSAKDQETVRSCRGPCHRKLPHCTHLCPHSCHPGQCPYPDKCSKKVTVRCKCQTLKKEWLCQDVQAAYHRDGCHPRDIPKNHFGIGLIPCNSDCKSKVQVFESELQLRKSQVTEKEKAPEAGKPLPKRKRRRERIQEPSQSTKLQKIAATTKRLLLFVFLFVGLLAAVYYGYESLLWLNDWMNEVDERRHRRYSRIS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00062 895 CDD RING-CH-C4HC3_NFXL1 94 163 - -
Accr4g00062 895 MobiDBLite consensus disorder prediction 809 840 - -
Accr4g00062 895 MobiDBLite consensus disorder prediction 1 47 - -
Accr4g00062 895 CDD NF-X1-zinc-finger 251 299 - -
Accr4g00062 895 CDD NF-X1-zinc-finger 358 407 - -
Accr4g00062 895 Pfam NF-X1 type zinc finger 314 332 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 368 386 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 616 626 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 209 226 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 722 740 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 421 439 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 515 525 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 261 279 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 442 466 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 Pfam NF-X1 type zinc finger 660 675 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 CDD NF-X1-zinc-finger 411 459 - -
Accr4g00062 895 ProSiteProfiles Zinc finger RING-type profile. 96 163 IPR001841 -
Accr4g00062 895 SMART znfxneu3 314 333 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 658 676 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 421 440 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 721 742 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 261 280 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 209 227 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 505 526 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 368 388 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 616 652 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 448 467 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 SMART znfxneu3 534 579 IPR000967 GO:0005634|GO:0008270
Accr4g00062 895 CDD NF-X1-zinc-finger 646 687 - -
Accr4g00062 895 CDD NF-X1-zinc-finger 304 351 - -
Accr4g00062 895 CDD NF-X1-zinc-finger 438 486 - -
Accr4g00062 895 CDD NF-X1-zinc-finger 197 245 - -
Accr4g00062 895 SUPERFAMILY RING/U-box 94 171 - -
Accr4g00062 895 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 68 530 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00062 Accr-Chr4 779263 785442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Accr4g00062 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00062 K15683 - gmx:100799540 1486.86