Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00052 ATGGCCTCTGGCTACCGGGATCGTACGTCGGAGTTCCGATCTCTCTCTCAAACTTTGAAGAAGATTGAGGGATTCTCATTGCCTAATCAAGCTGAAGATGCTCCTTCCACATCCAAACAATACACTCCCGTTTCCTATTCTGGATCTGAATTCAACAGAAAGGCCTCTCGAATCGGGTTGGGTATCCATGAAACCTCCCAGAAGATTTCGAGGCTTGCTCAATTGGCAAAGAAGTCATCCATGTTTAATGATCCCACTGTGCAAATACAAGAATTGACGGCTTTGATTAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAGAACATGGAAATAGCTGATGGAAATTATTCGGACGATAGAATTGTTCATTCAACAGCTGTTTGTGATGACTTAAAGGGAAAACTTATGGGGGCAACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACGGAGAATATCAAAGCCCATGAGAATAGGAAGCAGATATTTTCCAAGAAAGCATCTAGGGACATTCCTTTCCAGCATCGACCAAAGCCAGTGACTGAGCCACCCCCTTGGTCAAATTCATTTAGTGCATCTGAAAGTTCACAGCAAACATCAGCATCCCTATCAAATGAAGTTACACCGAGCAATCAATTAAGACGGAGGCTAGCTACTGAGAACACTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAGGTTGTCCCAAGACAAGAAAGTTATAGTCAGAGTCGTGCTTCTGCTCTGCACAGTGTGGAATCTACTATCACAGAACTTGGTGGGATCTTCACTCATTTGGCCACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGACGACAACATGGATGAATCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCAAAATATCATCGAATAGGTGGCTTTTAGTCAAGATATTTGCCATTCTGATTCTTTTTCTGCTGATCTTCATATTCTTCGTGGCCTAA 1020 0.4235 MASGYRDRTSEFRSLSQTLKKIEGFSLPNQAEDAPSTSKQYTPVSYSGSEFNRKASRIGLGIHETSQKISRLAQLAKKSSMFNDPTVQIQELTALIKNDITALNSALSDLQTIQNMEIADGNYSDDRIVHSTAVCDDLKGKLMGATKQLQDVLTTRTENIKAHENRKQIFSKKASRDIPFQHRPKPVTEPPPWSNSFSASESSQQTSASLSNEVTPSNQLRRRLATENTPSQQMEMSMMQQVVPRQESYSQSRASALHSVESTITELGGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLSKISSNRWLLVKIFAILILFLLIFIFFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00052 339 Gene3D - 46 302 - -
Accr4g00052 339 PANTHER SYNTAXIN 49 333 IPR045242 -
Accr4g00052 339 MobiDBLite consensus disorder prediction 192 222 - -
Accr4g00052 339 MobiDBLite consensus disorder prediction 163 222 - -
Accr4g00052 339 SMART tSNARE_6 242 309 IPR000727 -
Accr4g00052 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Accr4g00052 339 MobiDBLite consensus disorder prediction 163 183 - -
Accr4g00052 339 CDD SNARE_syntaxin5 250 322 - -
Accr4g00052 339 SUPERFAMILY t-snare proteins 49 302 IPR010989 GO:0016020|GO:0016192
Accr4g00052 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Accr4g00052 339 Pfam SNARE domain 284 335 IPR000727 -
Accr4g00052 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Accr4g00052 339 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00052 Accr-Chr4 695383 697615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00052 1 339 SNARE and Associated Proteins AT5G05760 68.235 2.66e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00052 K08490 - qsa:O6P43_013881 476.478