Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02829 ATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCCGAATCTGCCAAGGCCTCTGATTCACAACCTGAACAACCCCAAGAAGAGCAAATCCACGAGGAAGTGAGAGTGGACGAACAACCAAACCCCGAAGCAACGCCTGAAGAGCACCAGGGACACGAAAGGATGGCCGTGGACGATGATACGCATCAGGAAGATGTAAAATTAGAAGAAAACGCCGATGTAACTGTACCTCCAGAAGTTCACCCTCAAGAGCAGGATAGCGAGCACCCCGAAACGGCGGAAGTTACAGCCGATGCTGCCCCATCTGAATCAGCTCAGGTTGAAGCGAATGGAGCCGAGGAAGGCAACGAGAACGATGGTGATGCTGAGGTTTTGGACGAAGAGGAGCCTATAGAGAAGCTTCTTGAGCCTTTTACGAAGGAGCAGCTCTACACTCTTGTCAGGCAAGCTGCAGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCTGCCCACCGAAAAATCTTCATCCACGGTCTTGGTTGGGACACCACTGCTGAAACCCTTACGACTGTTTTTGGGAAGTATGGTGAGATTGAGGATTGTAAGGCTGTTACTGACAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCTTGTTTAAGCATCGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCACAGAAAAAGATTGGGAACCGAACCACATCATGTCAATTGGCATCCGCGGGACCGGTCCCCTCGCCTGCTGCAGTGGTCCCTCCGATGTCTGAATATACTCAAAGGAAGATCTTTGTCAGCAATGTAAGTGCAGAAATCGATCCCCAAAAATTGCTTGAGTTCTTCAGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCACTGTTTGTATACAAGTCTGTAGAGAGTGCAAAGAAGGCTTTGGAAGAGCCTCACAAAAACTTTGAAGGACATACGTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATTCTCATCATCATCAGCCTCAGTACCAGTCAAGAAAGGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCAGGACCCGGACACTTGATGGCACCCTCAGCTCCTTCTGCAGGTTTCAACCCTGGAGTGGCTGCACAGGGGCTAAATCCGGCACTTGGGCAGGCCTTGACTGCTTTGCTTACTACTCAAGGTGCTGGGCTAGGTTTGGGTAACCTGCTTGGAGGCCTTGGTGGTGCACCCGCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAATCAGCCTGCTGTGGGCTACGGGAACCAACCAGGAATGCAAGGGGGGTACCAAAATCCGCAAATGGGACAGGGCAGTGGTGTTAGGCCTCACCCTGGCCCTGGTGCTCCTTACATGGGTCATTAG 1482 0.5128 MAKKRKLRSSEPESAKASDSQPEQPQEEQIHEEVRVDEQPNPEATPEEHQGHERMAVDDDTHQEDVKLEENADVTVPPEVHPQEQDSEHPETAEVTADAAPSESAQVEANGAEEGNENDGDAEVLDEEEPIEKLLEPFTKEQLYTLVRQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTTVFGKYGEIEDCKAVTDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVVPPMSEYTQRKIFVSNVSAEIDPQKLLEFFSQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSHHHQPQYQSRKEKNKYQSGGHGPGPGHLMAPSAPSAGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPANQAGPPAGYVNQPAVGYGNQPGMQGGYQNPQMGQGSGVRPHPGPGAPYMGH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02829 493 MobiDBLite consensus disorder prediction 464 493 - -
Accr3g02829 493 MobiDBLite consensus disorder prediction 1 123 - -
Accr3g02829 493 SUPERFAMILY RNA-binding domain, RBD 254 368 IPR035979 GO:0003676
Accr3g02829 493 SUPERFAMILY RNA-binding domain, RBD 161 251 IPR035979 GO:0003676
Accr3g02829 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Accr3g02829 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Accr3g02829 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Accr3g02829 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Accr3g02829 493 Gene3D - 259 386 IPR012677 -
Accr3g02829 493 SMART rrm1_1 173 245 IPR000504 GO:0003723
Accr3g02829 493 SMART rrm1_1 269 341 IPR000504 GO:0003723
Accr3g02829 493 Gene3D - 48 254 IPR012677 -
Accr3g02829 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 74 348 - -
Accr3g02829 493 MobiDBLite consensus disorder prediction 344 399 - -
Accr3g02829 493 MobiDBLite consensus disorder prediction 354 368 - -
Accr3g02829 493 MobiDBLite consensus disorder prediction 25 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02829 Accr-Chr3 58881794 58883275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02829 247 347 C2H2 Transcription Factor Family AT2G19380 28.713 6.32e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02829 K12741 - qsa:O6P43_020877 598.971