Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02787 ATGGATTTTGAACTGCGAAGAGCGAAAGAAAGACTAGAAAGAGAGCAGAAGCAGTGGATGGAGAAGGCCCGGTTGAAAGTCGAGAAGGAAAGGAAGGCTCGACAAGAGGCTAAGAATCAAAGGGATGCCATTGAAGCTGTTCGAAGATCTCGCCGTATTGATGCTGCCAAAGCCCGACGAAAGGCTGAGGAACAGATGCAAGAAAGCTTACTTACTGGAAGGGGAATTGTGTTTTACCGTTTATTAGAAGCTGTACCTTGTCAAGGTAATGGTGATAAGATCAAACTGCCACCTTCATGCTTCACAGAATTGTCTGATCACGGGGCCCTTGATAAGGGACCCATGTACTTTCAGTTGTTAGTAGTTCATGGGGAGGGTTCTTCAGGCACAAAACCTACTGGTGAAGAGAACCAAGGGACCACCCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTAGGTCTTCCTCCTCATGTATGGAATAATTTGTTTGCTGACATCACTCCTAAGTCCCCATTAGTGGAGGTCCGTTATGTTGGGCTTTCAAAGGGGACATATGCAAAACTTCAACCTGAAAGGGCAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAACATGCAACTCTTTCTCAAGGTGATATTTTAACAGTCAACTATGGGGAACTTGCTTACAAATTGAGGGTTCTGGAGCTGAAACCTTCTTCAAGTGTATCTGTCTTAGAAACAGATATCGAAGTTGACATTGTTAATCCTGATGCAAGCTCAGAAAAGAGTGATCAGCATGTTTTACTCCTGCTTGAATTTGGCGTGCCACAATCTGGAATGGTTGACGAAGGAAATTTTGTATACTACAAATTCTCAATAGACAGCAGCACCTGGGAGAGAATTGTTGCTGAGAATTCCAGTATTGAGGTAAAATTGGAAGCTGAGACAGGTGGCGGAGACACTGATCTTTTTATATCTAGACATCCTCTGATATTTCCTACTCGACACCAGCATGAGTGGTCATCCCATGATGTTGGCTCAAAGGCTTTGATTCTTAGCTCTAAAGATAAGAACTTTGGGGCTGGGACGTACAGCATTGGAGTTTTTGGATTTAAGGTAACAACCAAATTCAAAATATCAGTGGCAATTCAGGAAATTTTCCACCAGAAAATAGGTCAACAAGCATCATCGTCTATGTCACATATGGAGACAGACACTGAACAGTGCCGAAATTGCAGGCATTACATACCTAGTAGGACTATCGCATTGCATGAAGCTTATTGTAGCAGACATAATGTTGTATGTCAACATGCTGGTTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAGGTGCGGTAAAGCTTTTCAGCAGGGAGAATTGGAAAAGCACATGAAGGTTTTCCACGAGCCTCTTCAATGTCCTTGTGGTATAGTCCTTGAGAAAGAACAAATGGTTGAACACCAAGCTTCAGTGTGTCCCATGCGTTTAATTGCATGCCGCTTCTGTGGTGACATGGTTCAAGCTGGAAGTTGTGCCGTTGACATCCGTGATAAGATCAGAGGGTTAACTGAACATGAGAGTGTCTGTGGATCAAGGACAGCCACATGTGATTCTTGTGGGCGTTCAGTGATGTTGAAGGACATGGACATTCACCACATTGCTGTTCATCAACAAGGTTGA 1713 0.4343 MDFELRRAKERLEREQKQWMEKARLKVEKERKARQEAKNQRDAIEAVRRSRRIDAAKARRKAEEQMQESLLTGRGIVFYRLLEAVPCQGNGDKIKLPPSCFTELSDHGALDKGPMYFQLLVVHGEGSSGTKPTGEENQGTTHSGVLEFTADEGSVGLPPHVWNNLFADITPKSPLVEVRYVGLSKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVNPDASSEKSDQHVLLLLEFGVPQSGMVDEGNFVYYKFSIDSSTWERIVAENSSIEVKLEAETGGGDTDLFISRHPLIFPTRHQHEWSSHDVGSKALILSSKDKNFGAGTYSIGVFGFKVTTKFKISVAIQEIFHQKIGQQASSSMSHMETDTEQCRNCRHYIPSRTIALHEAYCSRHNVVCQHAGCGVVLRIEESKNHIHCDRCGKAFQQGELEKHMKVFHEPLQCPCGIVLEKEQMVEHQASVCPMRLIACRFCGDMVQAGSCAVDIRDKIRGLTEHESVCGSRTATCDSCGRSVMLKDMDIHHIAVHQQG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02787 570 Coils Coil 9 50 - -
Accr3g02787 570 Pfam Ubiquitin fusion degradation protein UFD1 90 260 IPR004854 GO:0006511
Accr3g02787 570 Gene3D - 274 386 - -
Accr3g02787 570 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 25 515 IPR004854 GO:0006511
Accr3g02787 570 ProSitePatterns Zinc finger C2H2 type domain signature. 547 567 IPR013087 -
Accr3g02787 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 529 IPR013083 -
Accr3g02787 570 Gene3D - 77 183 IPR042299 -
Accr3g02787 570 Gene3D - 185 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02787 Accr-Chr3 58180693 58186361 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g02787 UFD1 1.4e-46 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02787 - - gmx:100777384 915.99