LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02775	ATGTCGGATGACATGCTTGTGCATTTCTCGTCCAACTCCTCCAACCAATCGGATCAGTCCTTGCCTACTAAGATTGCAAAGCTTGAAGCTCGAATGGTAGGCAAGGCTTCGTCTACAGTTACCACCACTCTGTCATCTGCCCAGCAGTCAACTTGGTCTTCTGTTCCTTCAGCTGCGAAATTTGGCGGACCTGCCGAGGATTTGGTTGGACCCTCCACTTCGAGTGATTCCGATGATGATAATGGTGGGGAATTCCTTATACAAGCTAACACACAGAAGCGCCAAAAACTTCAAGAAGATGACCACTCAAAGATTTTTGAACATGTTGAGAAATTTGCATACCAGGTGGTTACTGATGGAAGGCAAACTAGTTTGGATGTTGGGGAAGCAAAAGTTAGTGCTGATGTGAATAGGAAAAAAAATGGTCGTGGAAGGGGGAATTCTGGTTCAGGTAGGGGACGTGGTTCCAGAGTTACTGATCAAACCAGAACACAATTTTCTCCTCCAGCAGTTTTGGCCTCCAATGGTCAGCTCGACATTGCATGCCATAGAGAGGGAAGACTCAAAGATCAGATTCGCAATGACAGTTGCACTTCATTAGAGGAGGAGAATGAATCTTTACGTGCAAAAGTTGTTGCCATGGAGGAGGACCTGCGGAAAGCAAAACAAGAGATGTCTGATTATCAGAACCTTAGTCACCAGTTAGAAAAGGAGCTAAAGGACCTGAAAGATCATGAACAGCAAATGAAGCCTAAGAGGACAAAAATAATATCTGATCTGCTGATATCAGTTTCAAAGTCTGAGAGACAAGAAGCAAGGTTGAAAGTACGACAAGACTCGTTGAGACTGGGAAATGTTGGTGTAATCAGAGCTGGAACTCTCATATCCGAGACTTGGGAAGATGGGCAAGCATTGAAGGATCTTAACACCCAACTTAAACAACTGATAGAAACAAAGGAGGCTATTGAGCGGCAGCGCAAGTTGTTGAAGAAAAAACAATCTGGTGAGGGAGCAGATGCAGATACTGTTTTACAAGAAGATGAAGTCATCATTCAGGATGAAATCTACAAGTCTCGATTAGCTAGCATTAAACGTGAGGAAGAAGTTATTATGCGGGAGAGGGATCGCTATGAGCTAGAAAAGGGTAGACTAATACGTGAGATGAAACGCATACGAGATGAGGATGGTTCTCGTTTTAACAACTTTCAGATTCTGAACCATCGATATGCCCTGTTAAATCTTCTTGGAAAAGGGGGATTCAGTGAGGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATACGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTACATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACTTTGGTACATCATCACATTGTTCGTTTGTGGGACATCTTTGAGATAGATCACAATACATTCTGCACCGTTTTAGAGTATTGCAGTGGGAAGGATCTTGATGCTGTCCTTAAGGCGACACCTATATTGCCTGAGAGAGAGGCTAGGGTAATTCTAGTTCAGGTTTTTCAAGGCCTTGTTTACTTGAATAAAAGAACACATAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCATTGCCAAAGTGACTGATTTCGGTCTCAGCAAAATAGTTGATGATGATGTGGGATCCCAGGGTATGGAACTAACATCTCAGGGGGCTGGAACTTACTGGTACTTGCCTCCGGAATGCTTTGAGCTCAGCAGGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGTTGGTGTTTTGTTCTATCAAATGCTCTTTGGAAGACGCCCATTTGGCCATGACCAAACTCAAGAGCGTATACTACGTGAAGATACAATTATCAAAGCTCGCAAGGTTGAGTTCCCTACTAGACCTACGGTTTCTAATGAGGCAAAGGATTTTATACGGCGATGTCTGACGTATAACCAGGCTGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTTACCTACTCAAAGAAGTAA	2064	0.4293	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTVTTTLSSAQQSTWSSVPSAAKFGGPAEDLVGPSTSSDSDDDNGGEFLIQANTQKRQKLQEDDHSKIFEHVEKFAYQVVTDGRQTSLDVGEAKVSADVNRKKNGRGRGNSGSGRGRGSRVTDQTRTQFSPPAVLASNGQLDIACHREGRLKDQIRNDSCTSLEEENESLRAKVVAMEEDLRKAKQEMSDYQNLSHQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTLISETWEDGQALKDLNTQLKQLIETKEAIERQRKLLKKKQSGEGADADTVLQEDEVIIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQVFQGLVYLNKRTHKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVDDDVGSQGMELTSQGAGTYWYLPPECFELSRTPLISSKVDVWSVGVLFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPTRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYSKK	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02775	687	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	686	-	-
	Accr3g02775	687	Coils	Coil	305	332	-	-
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	152	166	-	-
	Accr3g02775	687	Coils	Coil	360	394	-	-
	Accr3g02775	687	SUPERFAMILY	Protein kinase-like (PK-like)	401	683	IPR011009	-
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	40	84	-	-
	Accr3g02775	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	535	547	IPR008271	GO:0004672\|GO:0006468
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	1	23	-	-
	Accr3g02775	687	FunFam	Serine/threonine-protein kinase TOUSLED	400	687	-	-
	Accr3g02775	687	Pfam	Protein kinase domain	410	682	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g02775	687	Coils	Coil	197	248	-	-
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	40	57	-	-
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	126	166	-	-
	Accr3g02775	687	ProSiteProfiles	Protein kinase domain profile.	409	682	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g02775	687	MobiDBLite	consensus disorder prediction	70	84	-	-
	Accr3g02775	687	SMART	serkin_6	409	682	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g02775	687	CDD	STKc_TLK	408	681	-	-
	Accr3g02775	687	ProSitePatterns	Protein kinases ATP-binding region signature.	415	438	IPR017441	GO:0005524
	Accr3g02775	687	Gene3D	Transferase(Phosphotransferase) domain 1	400	687	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02775	Accr-Chr3	57832573	57844320	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g02775	392	687	MAP Kinase Kinase Kinase	AT3G13530	27.759	7.90e-28	118

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Accr3g02775		Pkinase	1.4e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02775	K08864		-	gmx:100805168	1100.89