Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02642 ATGGCTGAAGCTTCAAGAACTCTTTACTCCACCGCCTTCATTCCCAGTTTCAGTCCGACCAAGAAAACTCATGAGATTCATCGTCATCTAATTCTCCCGCGAAAACACCAATTTCATTGTTCAGTTTCTGCAAGTGATGCCACCAAAACTGCCGTCACAGAAACCATCCCGTGGGGCTGCGAAATTGACTCTCAGGAAAACGCATCGGCTCTTCAGAGATGGTTGTCTGAATCAGGCCTCCCGCCACAGAAGATGGCCATTGAAAGGGTGGATGTTGGGGAGAGAGGACTCGTTGCCTTGAAGAATATAAGGAAGGGAGAGAAGTTGCTCTTTGTGCCTCCTTCACTAGTCATCACTGCAGATTCTGCATGGAGCTGCCCTGAAGCCGGTGAAATCTTGAAAAAGAATTCAGTGCCAGATTGGCCACTGCTTGCGACTTATCTCATAAGTGAAGCAAGCCTAATGAAATCTTCAAGATGGAGCAGTTATGTTTCAGCCTTACCTCGGCAACCCTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGTTATTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAACGGATTAATAATGTTATTGGAACATACAACGATTTGAGGCTCAGAATATTTTCCAAGCATCCTGGTTTATTCCCTGAAGAGGTGTTCAACATTGAGACCTTCAAGTGGTCATTTGGTATTCTTTTCTCTCGCTTGGTCCGATTACCCTCAATGGATGAGAAGTTTGCTTTGGTTCCCTGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACATTTTTGGATTATGATAAATCATCAAAGGGAGTTGTCTTTACCACAGATCGTCCCTACCAACCAGGTGAGCAGGTGTTTATATCGTATGGCAAGAAATCTAACGGAGAGCTTTTGTTATCATATGGATTCGTTCCAAAGGAAGGCACTAATCCTAGTGATTCAGCTGAGCTATTATTGTCACTCAGGAAATCTGATAAATGCTATGAGGAGAAGTTACAGCTCTTGAAGAAAAATGGACTATCAGCATCACAGTGCTTCCCTGTAAAAGTTACTGGTTGGCCATTGGAGTTAATGGCATATGCCTATTTAGCTGTGAGCCCTCCAAGCATGAGAGGCCAATTTGAAGAGATGGCTGCGGCTGCATCAAATAAAACAACTGTAAAGAAGGATTTGAGATATCCAGAGATAGAAGAGCAAGCATTGCAATTTATACTAGACAGCTGCGAAACCAGCATATCAAAGTACAAAAGATTTTTACAGGAAAGTGGATCACTTGATTTGGACGTGACTTCTCCGAAACAACTCAACCGAAGACTCTTTTTGAAACAACTGGCTGTGGACTTGTGCACTAGCGAGCAAAGAATACTGTTTCGCGCTCAATATATACTGCGAAGTAGGCTGAGGAATATGAGGACTGGTGGATTAAGAGCCCTACGAATTTTCGATGGGTTTAGGGATCTTTTCCAATGA 1497 0.4329 MAEASRTLYSTAFIPSFSPTKKTHEIHRHLILPRKHQFHCSVSASDATKTAVTETIPWGCEIDSQENASALQRWLSESGLPPQKMAIERVDVGERGLVALKNIRKGEKLLFVPPSLVITADSAWSCPEAGEILKKNSVPDWPLLATYLISEASLMKSSRWSSYVSALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKHPGLFPEEVFNIETFKWSFGILFSRLVRLPSMDEKFALVPWADMLNHSCDVETFLDYDKSSKGVVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSAELLLSLRKSDKCYEEKLQLLKKNGLSASQCFPVKVTGWPLELMAYAYLAVSPPSMRGQFEEMAAAASNKTTVKKDLRYPEIEEQALQFILDSCETSISKYKRFLQESGSLDLDVTSPKQLNRRLFLKQLAVDLCTSEQRILFRAQYILRSRLRNMRTGGLRALRIFDGFRDLFQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02642 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Accr3g02642 498 CDD SET_RBCMT 82 313 IPR044431 GO:0016279|GO:0018022
Accr3g02642 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Accr3g02642 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 65 432 - -
Accr3g02642 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 312 - -
Accr3g02642 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515
Accr3g02642 498 SUPERFAMILY SET domain 66 316 IPR046341 -
Accr3g02642 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 495 IPR036464 -
Accr3g02642 498 PIRSF RMT_SET 1 495 IPR011192 GO:0009507|GO:0030785
Accr3g02642 498 Gene3D set domain protein methyltransferase, domain 1 31 312 - -
Accr3g02642 498 Pfam SET domain 95 299 IPR001214 GO:0005515
Accr3g02642 498 Gene3D - 318 481 IPR036464 -
Accr3g02642 498 SMART set_7 83 305 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02642 Accr-Chr3 54908335 54913749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02642 70 268 NAC Transcription Factor Family AT3G56570 23.039 2.48e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr3g02642 SET 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02642 - - qsa:O6P43_014453 836.639