LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02548	ATGGTTTCTGTGAGGCTGTTCTCCTTTCTCTTCTTTCCCCTTGCCCTAAACCTAATTTCTCATCATCATGGCACTAATGCCCATGCCCAGTCAAACTTCTTGAAATTCTACTGTGCTAACGGTGCCTCAGATAATAGCAATAGCACCTTTCAGACCAATCTCAAAAACCTTTTGCTGAATATGTCCAACACACAAATCGACTATGGCTTCTACAACTTCTCCGGTGGCAATAACTCCGACAGAGTTAACGCCATCGTACTCTGCCGAGGAGATGTTAAGGTAGAAGATTGTCGCTCTTGTGTCTCAGATTCAAGGGTTGTTCTTCTCCAAGTGTGCCCTAACACGAAGGAGGCGATCGGTTATTACGATAACTGCTTGCTGCGATACTCCAACCGAACCATATTCCACGTCATGGAAGCATCGCCATTTCAATATGTGTTGAACACAGAGGCTGCGTTGGAGCAGGAACAGTTTCAGAGCGTGGTGACGAAGATGATGAATTTTTTAAGAGATAGGGCTGCTTCCGGCAACTCTGTTCGGAAGTTTGCGGCGGCGAATACAACGGCTCCTAGCAATCAGACCATACATGGTCTGGTACAGTGCACGCCGGACTTGTCGGAAAACGATTGCAGAGCTTGCTTGAATGCGGCAATCTCTGAAATTCCAAAATGTTGCAATGGAATGAAAGGGGGTAGAGTGTTAGGTCCCAGTTGCAACCTTAGATATGAGAGTTACGTTTTCTTTGACGTTGCTGCTGCACAACCATTCAAATCATTGTCGCTGTCTCCACCGTCGTCGTCTCCTCTTCCTCCGTTGGCTCCTCCGATATCCAACAAAGAAGAGAGGAACATAACAAGAGTTGATGCCATAGTTGTGCCAACTGTTGCCCTCATCGCATTGATTATCTTTGTCGTTATAATTAAAGCCTGGAGGCTAAAGAAGACTATCCAAACTGAAGAAGATAAAGATGAAATCATGACCGTTGAGTCATTGCAAATGGACTTTGAAACCATCAAAGTGGCAACAAATGATTTTTCTAATGCAAATAAGCTTGGACAAGGTGGATTTGGACCTGTTTACTTGGGTAGGTTAGGTGATGGAGAAGAGATTGCAGTAAAAAGGTTGAGCAGAGATTCTGGGCAAGGTGCAGTGGAGTTTAAGAATGAAGTGTTGTTGGTGGCCAAGTTACAACATAGGAATTTAGTCAGGTTACTTGGTTTTTGTCTCGAAAATAAAGAAAAACTCCTTATTTACGAGTTTGTTCCTAATAAAAGCCTTGATTACTTCATCTTTGATTCCATCAAAAGAGTGAAATTGAATTGGGAAAAGCGTTACAAAATCATAGAAGGCATTGCTAGAGGCCTTGTATACCTTCATCATGACTCTCGAGTAAGAATAGTTCACCGTGATCTCAAAGCAAGCAACGTGCTTTTAGATGAAGAGATGAATGCTAAGATATCGGACTTTGGCATGGCAAAATTATTTGTGGTAGATCAAACTCAAGCCAAAACAAGTACAGTGGTTGGAACTTTTGGATACATGGCCCCTGAATATATAATGAATGGAACATTTTCAACCAAGTCAGATGTATTCAGTTTTGGAATATTGGTTTTGGAAATTATAAGTGGCCAGAAAAATGGTCAATTCCAGGATGGGGAAAATGCAGAGCATATAGTAAGCGCGGTTTGGAAAAACTGGACAAAGGGAACGTTGTCAAATATTGTGGATCCAACGTTGATGGAGGATGCTGGATCAATAAATGAAATACTGAGATGCATCCACATAGGGTTACTATGTGTTCAAGAAAATGCAGATCACAGGCCAACAATGGCTTCCATTGTTCCAATGCTAAGTACTCGTTCCATAACCCTACCTGTTCCTTCAGAACCTTCGTTTTATATTTTTAAAAGCTTACAAGGAATCAAATCATTCTCTTCTGGAGATCAATCTGCCCATGGATCCATAAATCATCTTTCAATTTCGGAGCAATATCCTCGCTAG	2001	0.4188	MVSVRLFSFLFFPLALNLISHHHGTNAHAQSNFLKFYCANGASDNSNSTFQTNLKNLLLNMSNTQIDYGFYNFSGGNNSDRVNAIVLCRGDVKVEDCRSCVSDSRVVLLQVCPNTKEAIGYYDNCLLRYSNRTIFHVMEASPFQYVLNTEAALEQEQFQSVVTKMMNFLRDRAASGNSVRKFAAANTTAPSNQTIHGLVQCTPDLSENDCRACLNAAISEIPKCCNGMKGGRVLGPSCNLRYESYVFFDVAAAQPFKSLSLSPPSSSPLPPLAPPISNKEERNITRVDAIVVPTVALIALIIFVVIIKAWRLKKTIQTEEDKDEIMTVESLQMDFETIKVATNDFSNANKLGQGGFGPVYLGRLGDGEEIAVKRLSRDSGQGAVEFKNEVLLVAKLQHRNLVRLLGFCLENKEKLLIYEFVPNKSLDYFIFDSIKRVKLNWEKRYKIIEGIARGLVYLHHDSRVRIVHRDLKASNVLLDEEMNAKISDFGMAKLFVVDQTQAKTSTVVGTFGYMAPEYIMNGTFSTKSDVFSFGILVLEIISGQKNGQFQDGENAEHIVSAVWKNWTKGTLSNIVDPTLMEDAGSINEILRCIHIGLLCVQENADHRPTMASIVPMLSTRSITLPVPSEPSFYIFKSLQGIKSFSSGDQSAHGSINHLSISEQYPR	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02548	666	ProSiteProfiles	Gnk2-homologous domain profile.	140	247	IPR002902	-
	Accr3g02548	666	FunFam	cysteine-rich receptor-like protein kinase 10	421	624	-	-
	Accr3g02548	666	CDD	STKc_IRAK	351	617	-	-
	Accr3g02548	666	ProSiteProfiles	Protein kinase domain profile.	345	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g02548	666	Gene3D	-	141	247	IPR038408	-
	Accr3g02548	666	Gene3D	-	30	133	IPR038408	-
	Accr3g02548	666	FunFam	Cysteine-rich receptor-like protein kinase 10	309	420	-	-
	Accr3g02548	666	Gene3D	Phosphorylase Kinase; domain 1	306	420	-	-
	Accr3g02548	666	FunFam	Cysteine-rich receptor-like protein kinase 10	143	247	-	-
	Accr3g02548	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	28	661	-	-
	Accr3g02548	666	ProSiteProfiles	Gnk2-homologous domain profile.	32	134	IPR002902	-
	Accr3g02548	666	SMART	serkin_6	345	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g02548	666	Pfam	Protein tyrosine and serine/threonine kinase	348	616	IPR001245	GO:0004672\|GO:0006468
	Accr3g02548	666	SUPERFAMILY	Protein kinase-like (PK-like)	334	638	IPR011009	-
	Accr3g02548	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Accr3g02548	666	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	31	134	-	-
	Accr3g02548	666	Gene3D	Transferase(Phosphotransferase) domain 1	421	623	-	-
	Accr3g02548	666	Pfam	Salt stress response/antifungal	38	131	IPR002902	-
	Accr3g02548	666	Pfam	Salt stress response/antifungal	154	245	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02548	Accr-Chr3	52450192	52454009	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g02548	10	666	Receptor kinase-like Gene Family	AT4G21410	45.308	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr3g02548		PK_Tyr_Ser-Thr	9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02548	-		-	lang:109353867	724.931