LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02543	ATGGAGTCAGAGGATAATCATTTTTCAGATTCTAAGCCAGCCTGTGGGTCAGCAGGTCCTTCTGGGATCTCTCTACTTAATGTTGCTAAAAAAGTGGAAAGCAATGCTTGGGGGATACCGCATGGGGCTGGTGCACATCATGCATCTAGTGATGCTAGCTTGTTTTCTAGTTCTCTGCCTGTTCTTCCGCATGAAAAGTTGAATTTCCCTGATTCAGTGCGTTATGGCCAACCTTTCGATGATAACATGCCAATGCTTAATCAAGACCACAAAGAAGTTGAGGGGTATGATCCACTTGAAGATGTCGAAGCCAATGCTATTGGAAACATACTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATATGGACGAAAATGATTTGTTTGGTAGTGGAGGAGGATTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGAATGTCAAAGATGAGCATTACTGATGGAGTTTCTTTAAACGGTATCGGCCATTATGTACTTCCAAATGGTGTAGGACCTGTTGCTGGGGAGCATCCCTATGGAGAACATCCATCGAGAACATTATTTGTGAGAAACATTAATAGTAATGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTACGATATTCGAGATGCTCGTACTGCGATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAATCCTTCTGAGAAAGACATCAATCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGTCTAATATTTGGGGCTTGTGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACATCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGACGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGGGCGAGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACGTAGATGAAGCACGGACTTTTAGACATCAAGTAAGCTCACCAATAGCCAATTCTCCTCCGGGTAACTGGCCACAATTTGGCAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCAGTAAATAGCAACCATTCATCTGGATTGGCTGCTATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAATTCAAATCAGATATTTACAAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCCTTTCCCGAGCTAAAAGCGAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAATCAAGCTCAACTTCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCAAACACTTCTGCTTGGTCGACGTCTTCTGCTGGGCTCCCTTTTACATCCAGTAGTGAGAAGCAGGGTTTCCCATATACTAATAGACACAATTCCTTTCTTGGCACCCGCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGATAGGCATTTTAGCTATTTCCCAGAGTCACCTGAAACTTCTCTCGTGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAGCTTTATGAACATGGGTGCTCGTGCGGCTACTGGGGTTATTGGTCTTTCAGGAAATACAACTGAAATTAGTTCACCTAATTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGAGTGGTTGCAAATAATGAGGGGTTTACTGAACGTGGTCGGAATCGGCGACCTGAAAATAGTGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGCGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATCCCTAATAAGTACACCTCAAAGATGCTGCTGTCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCCGCACTTGTGACACACTTCCAAAATTCAAGCTTGATGAACGAGGATAAGAGATGCAGGCCTATTCTCTTTCATTCAGAGGGCCAAGAGATTGTTGATCAGGAACCTTTCTTATTGAGCAATTTGAATATTTGCATCCGCCAACCAGATGGGTCATACTCGGGTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGATGACAAGCTGTAG	2550	0.4188	MESEDNHFSDSKPACGSAGPSGISLLNVAKKVESNAWGIPHGAGAHHASSDASLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMLNQDHKEVEGYDPLEDVEANAIGNILPDDEEELLAGIMDDFDLSRLPSQLEDMDENDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVSLNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGACGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDVDEARTFRHQVSSPIANSPPGNWPQFGSPVEHSYLSSFSKSPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNNSNQIFTNAVSTQGVAFQNSLSFPELKANASSRPIATFGESSSTSSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSTSSAGLPFTSSSEKQGFPYTNRHNSFLGTRSHHHVGSAPSGLPLDRHFSYFPESPETSLVSPVSYGSINHSDGSFMNMGARAATGVIGLSGNTTEISSPNFRLMSLPRHSSLFLGNGSYSGVVANNEGFTERGRNRRPENSVTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFLLSNLNICIRQPDGSYSGDLLESPKGDLDDKL	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02543	849	SMART	rrm1_1	288	356	IPR000504	GO:0003723
	Accr3g02543	849	SMART	rrm1_1	203	271	IPR000504	GO:0003723
	Accr3g02543	849	SMART	rrm1_1	694	770	IPR000504	GO:0003723
	Accr3g02543	849	FunFam	MEI2-like protein 5 isoform 2	191	285	-	-
	Accr3g02543	849	MobiDBLite	consensus disorder prediction	1	20	-	-
	Accr3g02543	849	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	29	809	-	-
	Accr3g02543	849	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	287	360	IPR000504	GO:0003723
	Accr3g02543	849	SUPERFAMILY	RNA-binding domain, RBD	694	779	IPR035979	GO:0003676
	Accr3g02543	849	CDD	RRM2_MEI2_like	286	356	-	-
	Accr3g02543	849	Pfam	RNA recognition motif 2	692	788	IPR007201	-
	Accr3g02543	849	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	202	275	IPR000504	GO:0003723
	Accr3g02543	849	SUPERFAMILY	RNA-binding domain, RBD	199	362	IPR035979	GO:0003676
	Accr3g02543	849	Gene3D	-	191	285	IPR012677	-
	Accr3g02543	849	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	289	354	IPR000504	GO:0003723
	Accr3g02543	849	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	204	268	IPR000504	GO:0003723
	Accr3g02543	849	FunFam	Protein MEI2-like 1	286	381	-	-
	Accr3g02543	849	CDD	RRM1_MEI2_like	201	277	IPR034453	-
	Accr3g02543	849	Gene3D	-	286	382	IPR012677	-
	Accr3g02543	849	CDD	RRM3_MEI2_like	695	780	IPR034454	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02543	Accr-Chr3	52294748	52300603	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g02543	199	353	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.829	1.82e-10	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02543	-		-	gmx:100812324	1335.47