Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02504 ATGGCGAGACGACCAAAACAGAAGAACATGACACTGATCACAGACGCCAGAACCAAGCAGGTCGCTTTCTCCAAGCGTCGTCATTCTATCTTCAAGAAAGCCTTAGATCTCTGTACCTTGTGCGCGGTGGAAATGGCGATCATCGTCTTCTCGCCCGGCGGAAAAGCCTACTCCTTCGGCAATCCTTCGACCGAAGCAGTTCTCAACAGATTCATCGCTGCTGGTTTTTCGGCGAATCTGATGATGATCCGTCGTCGTAATTCTTCTTCCGATGAAGAAGAAAGGGCCCGACAAGAAGCTACGATGGCGGAACTTAACAGACAGTACAGTGATCTGAGTGCTCAGTTAAAAGAAGAGAAGAAAAGAGAGAAGGAGCTGAAGAAGAAGATGAAGAATCTTCCAGATATTGAAAAGATGAACAGAGATGAGCTGATGAAGATGAAGGAGTGGCTTGAAGATCTGAGAGTGAAAGTACAGAACCGTGAAGAGGAGATGTTGGCTGCGCAGACGACTATGGATGATGATCTGAGATTAACGTTGGGTGGTGTATATTCTGCAGGAGATCAAGCTTGTTCAAGCTCTGTGAAAACTCATCGTGGTGAAGCTGGAGACGAAGATTTTTCTGCAAATATGGATGATGGTGATCTTAGTCTGAGTCTTTCAGCTTTTGTCCCCAAGTGA 681 0.4611 MARRPKQKNMTLITDARTKQVAFSKRRHSIFKKALDLCTLCAVEMAIIVFSPGGKAYSFGNPSTEAVLNRFIAAGFSANLMMIRRRNSSSDEEERARQEATMAELNRQYSDLSAQLKEEKKREKELKKKMKNLPDIEKMNRDELMKMKEWLEDLRVKVQNREEEMLAAQTTMDDDLRLTLGGVYSAGDQACSSSVKTHRGEAGDEDFSANMDDGDLSLSLSAFVPK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02504 226 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 ProSiteProfiles MADS-box domain profile. 13 63 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 Coils Coil 88 133 - -
Accr3g02504 226 SMART madsneu2 2 62 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 Coils Coil 151 171 - -
Accr3g02504 226 Gene3D - 16 81 IPR036879 GO:0003677|GO:0046983
Accr3g02504 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Accr3g02504 226 SUPERFAMILY SRF-like 8 74 IPR036879 GO:0003677|GO:0046983
Accr3g02504 226 PANTHER MADS BOX PROTEIN 7 161 - -
Accr3g02504 226 FunFam Agamous-like MADS-box protein AGL62 15 80 - -
Accr3g02504 226 MobiDBLite consensus disorder prediction 189 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02504 Accr-Chr3 51254316 51254996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02504 10 158 Type I MADS-box Gene Family AT2G24840 37.736 3.27e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr3g02504 SRF-TF 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02504 - - pcin:129297271 233.417