Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02489 ATGAACCATAGTGTTCCTGCTTGTAATTTTCAGAGCAATAGCGGTTTCACCAATCAAAAGAATCCCATGGGGATGGGACCAGATCAAGAACTTGTAGAGATCCTTTGGGAAAATGGACAGGTAGTTTTGAACAGCCAAACGCATAGGAAACCATTTTTGAATTCAGTACACTCAAGGCAAGTTCAGAATAATGATCAAACAACATTGAGGACTAGTGGATTATATGGGAACTCGAATTTGTTTCAAGAAGATGAGACAGTCTCATGGATCCAATACCCACTGGAAAATCCATTGGAACAAGAATTATGTTCAGACTTTTTACCTGAACTTCCATCTTGTGAGATTGAACCTGATAGGCCAAATAAGCAGTTTGAAGAAGATAAGTTCGCCAAATTCACTACTGACAGCGCCTCCCATCTGACTGCAACTTCACAACCACCTAATATGAAACTGTCCTCTGTTGAGAAATTCTCAGGAAATCCCATCCTTTCTCCTAGATTTTTTCCTGATTCATCTCAGAAAAATGTTGACTTTAACAGGTTGCCAAAAGTCCTCAATTTCTCTCATTTCTCAGCAGTTCCGAAGGTTGTTTCTGCATCTTCTAATGCACAACATGTAGAAAAAGGTACAGGTAATACGTTGCAAAATGAGGCTGGAGAGGGCTCGGTGATGACGGTTGGTTCAAGTCATTGTGGCAGCAATCAAATTCCTCGAGACCGAGATGTGAGCAGGATTTCAAGCAATGGTGTTTGGACTACTACTAGTTTGTCAGCAGAGCCTTCTTCCTTAAGGGATAATAATGTTCAGAGAAAACTTCCAACGGGTGAAAATGGGAAACCAGAAACACATGAACCAACTGTCACTTCATCTTCTGGGGGTTCAGGAAGTAGTCTTGAAAAAACTTGTTCCCGCTCTACTAGTATCTGTAGCCAGAAAAGAAAAGGGACAGATTCAGAAGAGTTAGAGAAACAAAGTGAGACCGCAGAACTCCAATCAGTAGCTAGAAACAAGGCTCAGAAGACAGGGTCTTCCCAAAGGAACCGTGCTGCTGAAGTTCATAATCTCTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCGTTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCAATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGCTTCAGCTTCAGATGATGGTGATGGGAGCTGGCATGGCGCCAGTGATGATTCCAGGAATTCAGCACTACATGTCTCAAATGGGTATGGGATTGGCAACAGTAACACCTTCTTTGTCTAATCATATGAATATACCGAGAGTGCCACTCGACCAATCCATATCTATGTCTCAAGCACCAAATCAGACTGCAACATTCCAAGCTCCTCTTCTGGGTCCCTTTAATTACCAAAATCATATGCAAAATCCATGTCTTTCTGAGCAATATGCACGCTGCATGGGCTATCATCTTATGCAAAGTGCCTCTCAGTCAATGAATGCATTCAGTTATGGTTCCCAGGCAGTACAACACAGTCAAACAATGATTCCACCCAGCAATAGCAATGGACCCACTAGCGGGGCAGCTAATACCAATGATGCTTAA 1614 0.4213 MNHSVPACNFQSNSGFTNQKNPMGMGPDQELVEILWENGQVVLNSQTHRKPFLNSVHSRQVQNNDQTTLRTSGLYGNSNLFQEDETVSWIQYPLENPLEQELCSDFLPELPSCEIEPDRPNKQFEEDKFAKFTTDSASHLTATSQPPNMKLSSVEKFSGNPILSPRFFPDSSQKNVDFNRLPKVLNFSHFSAVPKVVSASSNAQHVEKGTGNTLQNEAGEGSVMTVGSSHCGSNQIPRDRDVSRISSNGVWTTTSLSAEPSSLRDNNVQRKLPTGENGKPETHEPTVTSSSGGSGSSLEKTCSRSTSICSQKRKGTDSEELEKQSETAELQSVARNKAQKTGSSQRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQMMVMGAGMAPVMIPGIQHYMSQMGMGLATVTPSLSNHMNIPRVPLDQSISMSQAPNQTATFQAPLLGPFNYQNHMQNPCLSEQYARCMGYHLMQSASQSMNAFSYGSQAVQHSQTMIPPSNSNGPTSGAANTNDA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02489 537 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Accr3g02489 537 CDD bHLH_AtPIF_like 348 411 IPR047265 -
Accr3g02489 537 Gene3D - 343 405 IPR036638 GO:0046983
Accr3g02489 537 MobiDBLite consensus disorder prediction 201 273 - -
Accr3g02489 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 411 IPR036638 GO:0046983
Accr3g02489 537 MobiDBLite consensus disorder prediction 1 22 - -
Accr3g02489 537 MobiDBLite consensus disorder prediction 513 537 - -
Accr3g02489 537 SMART finulus 354 403 IPR011598 GO:0046983
Accr3g02489 537 MobiDBLite consensus disorder prediction 281 312 - -
Accr3g02489 537 Coils Coil 354 374 - -
Accr3g02489 537 MobiDBLite consensus disorder prediction 327 350 - -
Accr3g02489 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Accr3g02489 537 FunFam Basic helix-loop-helix transcription factor 343 406 - -
Accr3g02489 537 MobiDBLite consensus disorder prediction 201 359 - -
Accr3g02489 537 PANTHER TRANSCRIPTION FACTOR PIF3 17 519 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02489 Accr-Chr3 51081755 51084457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02489 9 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.519 3.07e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g02489 HLH 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02489 K16189 - gmx:100784531 626.32