Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02477 ATGATCAGTACAATTTTCAGAAGATCTTGTTCCTTAGTCTCAAGGCGCGCTTTCGCTGCCTCCACTTTTATCGAGTATCAGCATCACCTCACCTCATCAGTCGCCGGGTATGGTTGTGTTGCCGGCACTGAGCTTCGGCCATTCTCCAACTTGTTTGGTTCCGGTGGGTTCAAGTCAAGCGCATTTCATTCCCAATCGGGGCCGTTGAATTTCCGCACGTCATTGGTTCCTCATGCTGAGTACGCTGTTGATGATTACTCTTTTGAAGAAGGTCCCAAGGGAAACAGTGACGATGGCCTTGAAATTGCGAAGCTTGGTATTGCTCAGGAAATAGTCTCTGCTTTGGCCAAGAGAGGTATAACGAAGCTCTTCCCTATACAGAGAGCTGTTCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGCCGAGCCAGAACAGGAACCGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAATATAATGCCAAGCATGGACGAGGAAGGGATCCTCTTGCTCTGGCTTTGGCACCAACTAGAGAACTTGCCCGGCAGGTTGAAAAGGAATTCGCTGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCGAGCCAAATGAGGCAGCTTCAATACGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGAGGTGCTCTAAATTTGAGAGACGTTCAGTTCGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGTTTTCAGGAAGATGTTGAAAAAATCTTGGAGGCACTGCCTCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAGATACTTGAATGATCCTGTAACCATTGACCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACATTATACTCAATTGCCTCAGATATGTATGGAAAAGCGGGAATTATTGAAACTCTAGTAACTGAACACGCTAAAGGAGGAAAGTGTATTGTTTTCACCCAAACGAAACGTGATGCTGATCGACTATCATATTCCATGTCAAGAAGCCTCAAGTGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTCAATGTTTTAGTAGCGACTGATGTTGCTTCACGTGGGCTTGACATACCAAATGTTGACCTTGTAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGACGAACAGGTCGAGCTGGGAAGAAAGGAACTGCTATTCTTATTTACACTCAAGACCAAACCAGGGCTGTCAAGATTATTGAGCGTGATGTTGGCGGCAGATTTTCTGAGCTGCCAAGAATTGCTGTTGAAGGTGAATCAGTAGGTATGTTTAATAGCAGGGGTGGTGGTCGATTTAGCAGTTTTGGAGGTATGCGGGATCGTAAATTTGGTGATTCAGGTTTTGGCCGAGGTCCTGGATTTGGCCGCTCTAGCTTTGGTAATGCTGATGAGGGGGGAAGGTTTGGCGGACCTAGTTCTGGTCGTTTCAGTGGTCCTGGATCAAGTCAACCAAGAAGTGGGTTTGGGGGATCATTTGGTAATTCTTCAGGTGAAAGGTCAGGTCGATATGGTTCATCTGGTGGTTTTGGCTCTAGACCATCAGACAGTGGCTTTGGCAGATCTAGCTTAGATCGATCAGGAAGCACTGGAGGATTTGGGTTTAGTCGTCCAAGTGGTGGTGGCAGTGGATTTGGCGGTTCAGATCGTTCTGGTGGTTTTGGCTCAGGTCAATCTAGTTTATTTGGTGATTCTCAAGGTAGTGGTGGTTTTGGTGCTTTTGGGAATGACCAGAATAACAGTGGTAGAAGGCCCTTCTGA 1935 0.4553 MISTIFRRSCSLVSRRAFAASTFIEYQHHLTSSVAGYGCVAGTELRPFSNLFGSGGFKSSAFHSQSGPLNFRTSLVPHAEYAVDDYSFEEGPKGNSDDGLEIAKLGIAQEIVSALAKRGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQYNAKHGRGRDPLALALAPTRELARQVEKEFAESAPNLDTICVYGGTPISSQMRQLQYGVDIAVGTPGRIIDLLNRGALNLRDVQFVVLDEADQMLQVGFQEDVEKILEALPPKRQTLMFSATMPSWIRQISRRYLNDPVTIDLVGDSDQKLADGITLYSIASDMYGKAGIIETLVTEHAKGGKCIVFTQTKRDADRLSYSMSRSLKCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGGRFSELPRIAVEGESVGMFNSRGGGRFSSFGGMRDRKFGDSGFGRGPGFGRSSFGNADEGGRFGGPSSGRFSGPGSSQPRSGFGGSFGNSSGERSGRYGSSGGFGSRPSDSGFGRSSLDRSGSTGGFGFSRPSGGGSGFGGSDRSGGFGSGQSSLFGDSQGSGGFGAFGNDQNNSGRRPF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02477 644 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 480 - -
Accr3g02477 644 CDD DEADc 111 306 - -
Accr3g02477 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 460 IPR027417 -
Accr3g02477 644 SMART ultradead3 119 322 IPR014001 -
Accr3g02477 644 MobiDBLite consensus disorder prediction 534 594 - -
Accr3g02477 644 Pfam DEAD/DEAH box helicase 124 291 IPR011545 GO:0003676|GO:0005524
Accr3g02477 644 Gene3D - 101 309 IPR027417 -
Accr3g02477 644 MobiDBLite consensus disorder prediction 502 644 - -
Accr3g02477 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 305 IPR014001 -
Accr3g02477 644 CDD SF2_C_DEAD 341 448 - -
Accr3g02477 644 Gene3D - 320 476 IPR027417 -
Accr3g02477 644 FunFam ATP-dependent RNA helicase RhlE 93 308 - -
Accr3g02477 644 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 478 IPR001650 -
Accr3g02477 644 MobiDBLite consensus disorder prediction 610 644 - -
Accr3g02477 644 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Accr3g02477 644 SMART helicmild6 359 439 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02477 Accr-Chr3 50861395 50867751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02477 105 471 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 4.29e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02477 - - gmx:100778436 785.023