Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02475 ATGGTTGGTGGCAACAACATAAACGCAGTATTCTATGCCGACTCATACCATCCCATTCAAGCTGGAAGCATAGACGGCACAGATATTCTTCCTCACGATAATGCTGTTTATCGAGCTTTTCTCTGTTCTTCCGCTGGCCTCTATGACCCATTTGGCGATCCCAAGGCCAAAGGAGACCCTTATTGTACTGTTTTCGTAGGCCGCCTCTCTCGCGCCACCACAGAAGAAACCCTTCGCAAGGTTATGGGCAAGTATGGTCGGGTGAAGAACTTGCGCTTGGTCAGGGACATTGTGACTGGAGCCTCCTGTGGTTATGCTTTTGTTGAATATGAAACTGAAAGTGAGATGAGGCGTGCATATGAGGATGCTCATCATTCTTTTATCGACGATTGTGAAATCCTAGTTGATTTTGACAGACAGCAACTGATGCCTGGGTGGATTCCTAGAAGGTTAGGTGGTGGTCTTGGCGGTAAGAAGGAATCTGGACAACTTCGTTTTGGTGGAAGGGAAAGGCCATTTCGAGCTCCTCTGAGACCAATACCATACAAGGATTTGGAGAGGCTTGGCATTCCACCTCCTCCTGAAGGAAGATACATGTCACGTTTTCAGATCCCATCACCCCCTAGAAGAGAAAGGAGCAATCGAGACAGAGAAAGCTCTAGCAGGAGGAGTTCTAATGACAGGATGGAAGGTGCCGAGAGGCGTTATAAGAGTAGTTCAGGTCACCGGGATGACAACCATACTCATCGAAGGAGATCTGCGGAGAGGAGAGAGGAGAGAGATGGGGATTACTATAGTAGTAGTAGTAGGAGTTACGCTGAGAAGGAGCGTTATTCCAGGCAGGAACACACTCGTAAAAGGAAAGATAGAGATGAACACACTGAGAGGAGGCAGAAACATGACCGTTATTCCCATCGTGATGAGTAA 927 0.4768 MVGGNNINAVFYADSYHPIQAGSIDGTDILPHDNAVYRAFLCSSAGLYDPFGDPKAKGDPYCTVFVGRLSRATTEETLRKVMGKYGRVKNLRLVRDIVTGASCGYAFVEYETESEMRRAYEDAHHSFIDDCEILVDFDRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYKDLERLGIPPPPEGRYMSRFQIPSPPRRERSNRDRESSSRRSSNDRMEGAERRYKSSSGHRDDNHTHRRRSAERREERDGDYYSSSSRSYAEKERYSRQEHTRKRKDRDEHTERRQKHDRYSHRDE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02475 308 SMART rrm1_1 63 136 IPR000504 GO:0003723
Accr3g02475 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Accr3g02475 308 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 11 261 - -
Accr3g02475 308 Gene3D - 49 169 IPR012677 -
Accr3g02475 308 MobiDBLite consensus disorder prediction 208 265 - -
Accr3g02475 308 MobiDBLite consensus disorder prediction 151 308 - -
Accr3g02475 308 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 49 170 - -
Accr3g02475 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Accr3g02475 308 MobiDBLite consensus disorder prediction 273 308 - -
Accr3g02475 308 SUPERFAMILY RNA-binding domain, RBD 50 168 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02475 53 135 Eukaryotic Initiation Factors Gene Family AT1G49760 31.325 2.88e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02475 K13155 - cave:132162976 389.423