Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02471 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGGATCCACAAATCAGTTGGCAATGAATGTGGTGAGGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCGGATGGCAGACTGCAAAATGAGGCTACAGCTGATGGAGGTGGTAACATCCAGTCTACTGGAAGTAAAACTGCTATGGGTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAACCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCACCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAAGGAGGAAAAGGTCCTCGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAGCCGACTGGATCAAGTTCATGGCCTCAACAAATGTCTAATGTTGTCAATAGTCATGCAAATAGGAATTCTAGAATTTCAGATGATGATGGTGATGGTGATAATGATCATGATGATGGTGATGCTGACTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCCGCCACAAGTGGTCGTTCTGCTAACAAGGATAGAGATTGGGAGGGTGAAGAATCAGATGATGATAGTGATGACAATCTGGATGTTTCAGATGATGATGGTACCTACTATGCAAGAAAACCTCCGGGTAGGCAACGTAGCAAAGTGGGAAGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGGGGCATCTGGTAGGCAAAGAAAACCTAAAATTTCTTATGAAGAGGATGAGTCATCAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGATAGGTGCAAATGCTCGCAAGAACAATGGCCGTTCTTCTGCAGCTGCAGGTTTTTCTGGCCGGAACAGTGAGGTTCGCACATCTAGTAGAACAGTTAGGAGGAAGGTCTCATATGCTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGTCTCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCGACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTTAGTGGTTTTAAGAAGGTTTTAAATTATACAAAGAAAGTGACGGAGGACATCAGGTACAGGAGCACAATCTCGAGAGAGGAGATTGAAGTCAATGATGTGAGTAAGGAAATGGATTTAGATATTATCAAGCAAAATAGCCAGGTGGAGAGAATAATTGCAGATAGAATCAGCAAAGATAATTCTGACAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACATGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGATGCTGCAATGTCAGTTCAAGGAAAGACGGTAGATCTACAACGCAAGAAAAGTAAAGCAAGTTTGAGGAAGCTCGATGAACAGCCTGAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGCAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTCCCTGATATGAATATCATTGTATATGTCGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAACGATAAAAAGGTTGGCAGACCTATAAAATTTAATGCGCTTTTGACTACTTATGAAGTGGTTCTGAAGGATAAAGCGGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCACTACAGAACAGCGTTGAAGAGCTATGGGCTTTACTTCATTTCCTCGATCCTGACAAGTTCAAAAGCAAGGATGATTTTATTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCTAATCTTCACATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGGATACTTAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCATTAAGTAGTGATAGCAGTAAACTTGAGAGAATTGTCTTCAGCAGCGGGAAGCTTGCCATACTTGATAAGCTACTTGTTAAATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTAAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCCGAGTTGCGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACGAGAGCAGGAGGCCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGGGCACATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATTTGGTCATTCAAAAATTAAATGCTGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGTTTTTTTGACAAAAATGAACTGTCAGCAATTTTAAGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGAAACGACTTTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGTTGAGGGAGAGCAAGCGCATGAATTATTGAGTGCCTTTAAGGTTGCTAATTTGTGCAATGAAGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCGGTAGCCCAAGCTGAAGATGCATTGGCTCCACGTGCTGCAAGGAACATTAAAAGTTATGCTGAGGCCAACCAATCTGAAAGAAGTAGCAAGCGAAAAAAGAAAGAACCTGAGCCTTTTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGCTCCTGCAATGCCAATGATTGAGGGAGCGTCAGCACAAGTGAGAAGTTGGTCCTACGGGAATGTATCTAAAAGAGATGCACTGCGATTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTGAGTGGGGCATTTGCTGCTGCCCCGCCAGAAGCTCAGATTGAACTCTTCAATTCTCTAACTGATGGCTGTAAAGAAGCAGTGGAAATAGGAAGTGTGGACCCAAAGGGACCTCTATTGGATTTTTTTGGTGTCCCAGTGAAGGCGAATGATCTACTTAACCGTGTTCAAGAACTCCAGCTCTTGGCAAAGCGCATTAATAGATATGAAGATCCCATTGCACAGTTTCGTGTTTTAACGTATCTTAAACCTTCAAACTGGTCTAAAGGTTGCGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAATTGGGAAAAGATACGACTAGATGAAAGGCTTGGGCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCACGAAACTTTCTTGCCACGAGCTCCCAACTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTGTTGTTCTTGGTGCTAAAAATGCCAGTAGTAAAGGGGGACGCAAGGCTTCCAAGAAGGAGAGGGAAAATCTTATGACCATGTCAGCAGCACGAGGGCCAGAGAAGGGAAAATCAAGTTCTTCTAAAGTTACTGTCCAAATGAGAAAGGATAGACCCCTGAGGCCCCGGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCCGACAATGATGAAGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAGTGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTTTGCACAGGTTGCAGACAACCAGCGCCAATCTTCCAAAGGAAAAGGTGCTTGCCAAAATCCGCAGTTACTTACAGCTTCTTGGGCTGAGAATAGATCAAATTGTGTTGGAACACGAAGAGGAACCTTATAAGCAAGATAGGATGACTACACGATTGTGGAACTACGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAGATCTATTCCAAACTTAAGCAGGAGCAACAAGATGAGGCTGGGGTTGGCCCCTCTCACATCAATGGGTCAGTATCTGGTCCATTCGGGAGAAACCACCCTCGTCATATGGAGAGACAAAGAGGATACAAAAATTTGACTTCATATCAAATGCCAGAACCAGTTCACATTACAGGAAAATCCGAGGCTTGGAAACGAAGGAGGAGAGAAGGTGACAATCATTTTCAAGGTCAGCCACCGTCTCAGAGAGCTACGGGCAATGGAGTCCAAATATCTGACTCTAACTCGCTGGGGATTCTTGGCGCTGGACCCTCTGATAGACGTTTCGTTAGCGAGAAACCTTACAGGACACGACCCGGTGGTGCTCCTCCAAGACATGGTTTCTCGTCCGGGATAAAGTAG 5232 0.4247 MAFFRNFSNETVSHSVLEEKGQGQNADRIHKSVGNECGEASSSEKEFDMNMDAQYHSDGEPDGRLQNEATADGGGNIQSTGSKTAMGGRWGSTFWKDCQPMNHQNGQEYGQESQSGSDYRNAEGAEDNSPDGRGERLDSEDDDGQKEGGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSSSWPQQMSNVVNSHANRNSRISDDDGDGDNDHDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRDWEGEESDDDSDDNLDVSDDDGTYYARKPPGRQRSKVGRTVKPTRERKSFGASGRQRKPKISYEEDESSAEDSESESDDDFKSMRKIGANARKNNGRSSAAAGFSGRNSEVRTSSRTVRRKVSYAESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSNLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRSTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSDNVIIEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKARDAAMSVQGKTVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSLSSDSSKLERIVFSSGKLAILDKLLVKLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEVEGEQAHELLSAFKVANLCNEEDDGSFWSRWIKPEAVAQAEDALAPRAARNIKSYAEANQSERSSKRKKKEPEPFERVQKRRKAEYSAPAMPMIEGASAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVSGAFAAAPPEAQIELFNSLTDGCKEAVEIGSVDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRINRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGAKNASSKGGRKASKKERENLMTMSAARGPEKGKSSSSKVTVQMRKDRPLRPRRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLAKIRSYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHINGSVSGPFGRNHPRHMERQRGYKNLTSYQMPEPVHITGKSEAWKRRRREGDNHFQGQPPSQRATGNGVQISDSNSLGILGAGPSDRRFVSEKPYRTRPGGAPPRHGFSSGIK 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02471 1743 MobiDBLite consensus disorder prediction 349 369 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1 20 - -
Accr3g02471 1743 Gene3D - 605 844 IPR038718 -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1450 1491 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1618 1645 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 124 162 - -
Accr3g02471 1743 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 180 1636 - -
Accr3g02471 1743 CDD SF2_C_SNF 923 1055 - -
Accr3g02471 1743 SUPERFAMILY Chromo domain-like 406 489 IPR016197 -
Accr3g02471 1743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 934 1085 IPR001650 -
Accr3g02471 1743 Gene3D - 394 521 - -
Accr3g02471 1743 ProSiteProfiles Chromo and chromo shadow domain profile. 522 586 IPR000953 -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1 412 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1669 1684 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1208 1232 - -
Accr3g02471 1743 Coils Coil 1074 1094 - -
Accr3g02471 1743 CDD CD2_tandem 520 576 - -
Accr3g02471 1743 Pfam SNF2-related domain 633 902 IPR000330 GO:0005524|GO:0140658
Accr3g02471 1743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 798 IPR014001 -
Accr3g02471 1743 Pfam Chromo (CHRromatin Organisation MOdifier) domain 523 577 IPR023780 -
Accr3g02471 1743 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 845 1075 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 370 412 - -
Accr3g02471 1743 SMART DUF4208_2 1511 1616 IPR025260 -
Accr3g02471 1743 CDD CD1_tandem 407 487 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 97 122 - -
Accr3g02471 1743 ProSiteProfiles Chromo and chromo shadow domain profile. 409 488 IPR000953 -
Accr3g02471 1743 FunFam Photoperiod-independent early flowering 1 584 858 - -
Accr3g02471 1743 Pfam Helicase conserved C-terminal domain 931 1044 IPR001650 -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 41 65 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 216 243 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 296 323 - -
Accr3g02471 1743 Pfam Domain of unknown function (DUF4208) 1523 1615 IPR025260 -
Accr3g02471 1743 FunFam protein CHROMATIN REMODELING 5 isoform X2 524 576 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 182 206 - -
Accr3g02471 1743 Coils Coil 386 406 - -
Accr3g02471 1743 Gene3D - 524 576 - -
Accr3g02471 1743 Gene3D - 1340 1450 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 260 276 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 71 87 - -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1685 1709 - -
Accr3g02471 1743 SMART helicmild6 960 1044 IPR001650 -
Accr3g02471 1743 SMART ultradead3 610 810 IPR014001 -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1667 1743 - -
Accr3g02471 1743 SMART chromo_7 520 579 IPR000953 -
Accr3g02471 1743 SUPERFAMILY Chromo domain-like 501 577 IPR016197 -
Accr3g02471 1743 Gene3D - 845 1075 IPR027417 -
Accr3g02471 1743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1119 IPR027417 -
Accr3g02471 1743 FunFam Chromo domain-containing protein 1 397 522 - -
Accr3g02471 1743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 835 IPR027417 -
Accr3g02471 1743 MobiDBLite consensus disorder prediction 1203 1232 - -
Accr3g02471 1743 Coils Coil 1127 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02471 Accr-Chr3 50717229 50750311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02471 636 1071 RAD5 or RAD16-like Gene Family AT1G02670 26.190 7.35e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr3g02471 SNF2_N 1.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02471 K11367 - gmx:100808039 2753.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g02471 3 50717229 50750311 Accr3g02471 3 50717229 50750311 ECH