Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02449 ATGTGGTCTGGTGGAGGGTCGTCTAGGTCACTCAACTTCGGCCACTCTGAGATGGGCATGGTGGGCCTTCGAGATGTCTTCGTGGTGGCGCCTGCTTCTTCCTACCACCACCATCACAACGACGTCGTCATGGCCGATCCTCATCACAACGCCGCCACCATCCACGGCGTTATTCCACTCCTCACGGCGGCTCCTTGTCTCGACGGTGACACAAGCAACATGCTCAATCTCAGCAGCCATAATAATAACCGAAGCCGTAACACCGGAATTCAGCTTTGGCAGGATCATTACTTGAAGAAGCAAGGCCTTAACCCCGAACACGGCAATGGTACAACGACCTCCGGCAACCTAGCTCACAGCGGCGGCGGCGGTGGGTTAAGCGGTGGCTCGGCTTTGAGCTCAGGAGGAACAACGTGCCAAGACTGTGGCAATCAGGCGAAGAAAGATTGTAGTCATAGAAGGTGTAGAACTTGTTGTAAGAGCCGAGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTATCCGCTGCTCGTCGAAGGGAACGCCAGCTTATGGCCGCCGCCGCCTCATCCGGTGGTGGTGCTGGGTTTAGTGGGGCTACCTCAGTCTCCAAGAAACCTAGACTCGTCGCCTCACAAACCACCACGACCTCTCGTACTTCTACTTCCAACACAACTCCTCCTCGAAGCTTCGAAACTAGCTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCAGGTCAAGTACGTGCGCCGGCGGTGTTCAAGTGCGTTCGTGTGACGGCGGTGGCTGACGGGGACGATGAGTATGCTTATCAAGCGGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTCTTGTATGATCAAGGGGTTGAGAATGGAGATGGCTATCCTAACCTCTCCGAGCTACATTTGGGCGGTGGCGGGAACGGTGGAACAAGCGGCGGCGGTGCCGGAAGAAATGGAGCTACTTCATCTTCCCTAATGCTTGATCCTTCAGACTTATATGCTGCTGCTTCAGGTGGGGGTATACTTGCCGGTTCAACATATGGTAATGCCATAAATTGA 1077 0.5404 MWSGGGSSRSLNFGHSEMGMVGLRDVFVVAPASSYHHHHNDVVMADPHHNAATIHGVIPLLTAAPCLDGDTSNMLNLSSHNNNRSRNTGIQLWQDHYLKKQGLNPEHGNGTTTSGNLAHSGGGGGLSGGSALSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMAAAASSGGGAGFSGATSVSKKPRLVASQTTTTSRTSTSNTTPPRSFETSSSHQDASFKESLPGQVRAPAVFKCVRVTAVADGDDEYAYQAVVKIGGHVFKGFLYDQGVENGDGYPNLSELHLGGGGNGGTSGGGAGRNGATSSSLMLDPSDLYAAASGGGILAGSTYGNAIN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02449 358 MobiDBLite consensus disorder prediction 105 120 - -
Accr3g02449 358 NCBIfam LRP1 C-terminal domain 247 294 IPR006511 -
Accr3g02449 358 NCBIfam putative zinc finger domain, LRP1 type 138 180 IPR006510 -
Accr3g02449 358 Pfam Domain of unknown function (DUF702) 136 295 - -
Accr3g02449 358 MobiDBLite consensus disorder prediction 186 246 - -
Accr3g02449 358 MobiDBLite consensus disorder prediction 101 130 - -
Accr3g02449 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 66 341 IPR007818 GO:0003700|GO:0006355
Accr3g02449 358 MobiDBLite consensus disorder prediction 206 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02449 Accr-Chr3 50354005 50355365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02449 16 338 C2H2 Transcription Factor Family AT5G12330 52.395 2.41e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Accr3g02449 DUF702 3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02449 - - tcc:18589994 424.861