LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02448	ATGACAGCTTCATGCTTGAACCCACCAAGGTTATCTAGCACTGAAGATGACCATGTGATACTCTTTTCAACCTCTAATTCTCCTCAGGATTCAGTCTCCACCAGCCCTTCTTCTTCATCTTCTTCTTCATATTATTCTTCTTCTGGTAATCATAAACTTTCTGTTAGCAATCTCTCCTACACTCTTCACCCACATAAATCCATACCCTTTTCATTCTTTCACATGCCTCAAAAGCCAAGGCCTCTCCATATACTAAAGTCAGTCTCTTTTGCTGCCAAAAGTTATGAGATTGTTGCTGTTGTGGGTCCAAGTGGAACCGGGAAATCCACGCTTCTTCGTGTGGTTGCAGGGCGAGTTAAATACAGAGACTTTGATCCCAAAAGTATATCAGTCAATGATCATCCAATGACTAGTCCATCTCAGTTGAGGAAGATCTGTGGGTTTGCGGCACAAGAGGATAATTTGCTTCCTCTTTTGACTGTGAAAGAAACCTTAATGTTCAGTGCCAAGTTTAGGCTAAAAGAAATGTCATCAAAGGATAGAGAAGTGAGGGTAGAGAGTTTGTTGCAAGAGCTTGGGCTGCTTCATGTTGCAGATAGCTATGTTGGAGATGAAGAGAATAGAGGGATTTCTGGTGGAGAGAGGAAAAGGGTATCTATAGGTTCTGATATGATTCATAATCCTCCTATTTTGGTCTTAGACGAGCCAACCTCAGGTCTAGACAGTTCTTCAGCTCTTCATGTTATAGAGCTTCTTTCATTTATGGTTAAGTCAAGGAAAAGGATAGTGATTCTTTCAATTCACCAACCCAGCTATAAAATATTGCAGTACATTTCTAGGTTCTTGATCCTGTCTCATGGTTCAGTTGTGCACAATGGTAGCTTGAGGTCACTTGAGAAAACCATTACCAAGTTGGGATTTCAGATTCCAATGCAGCTCAATGCTTTAGAGTTTGCAATGGAAATTATACACACATTGGAAGATTCAAAAAATTCCACATATGATAGTGACATCACTTGTCCCATAATGCAAGAAAAGGAAGAAGAAATTGGTGAGATTCATAATTATACCAGTGATGATAACAGCAAAAGGATTTGCAGTGCCTGGTATTTGAACTTCATTGAGATCTTGTTTCTCTGCTCAAGATTTTGGAAGGTCATTTACAGAACAAAGCAGCTTTTCTTGGCCAGAACAATGCAGGCTCTAGTTGGTGGGTTTGGCCTTGGAAGTGTTTACATAAAGGTGAGGAAGGATGAAGGAGGGGTTGCAGGAAGACTTGGCCTTTTTGCATTTAGTCTGAGTTTTCTGCTCTCTTCCACAGTGGAGGCACTTCCAATATACCTTCAAGAGAGATGTGTTCTAATGAAAGAAGCCTCAAGAGGAGCCTACAAAATTTCCTCATACATGGTGGCAAACACACTTGTCTTCCTTCCCTTCTTGTTTGTAGTATCCATACTTTTCTCGGTTCCTATGTACTTGATTGTTGGTCTCAACCCGTCTCTCTTGGCTTTCGCCTTCTTCATCTTCATCGTCTGGCTCATAGTGCTCATGGCAAGCTCTCTGGTTCTGTTCTTAAGTGCACTATCTCCTGATTTCATTTCTGGGAACTCCATGATCTTCACTGTGTTAGTAGCCTTCTTCTTGTTCTCTGGGTACTTCATTCCAAAAGAGAGCATCCCCAAGTATTGGATTTTCATGTACTATGTCTCACTTTATAAGTACCCTCTTGATGCGTTACTCACAAATGAGTATTGGAATGTTAGGACTGAATGTTTCTCTTCATCAGAAGCAGAATCCAATTGCTTGCTTACTGGTTTTGATGTGCTCAAAAGTAGAGGGCTTGATAAAGATACAAGGTGGATGAATGTGGGCATCATGCTTGGCTTCTTTCTACTATATCGCGTGCTTTGTTGGCTTATTCTCACTAGAAAGGTTTCCAAGGCCACCATATAG	1953	0.4096	MTASCLNPPRLSSTEDDHVILFSTSNSPQDSVSTSPSSSSSSSYYSSSGNHKLSVSNLSYTLHPHKSIPFSFFHMPQKPRPLHILKSVSFAAKSYEIVAVVGPSGTGKSTLLRVVAGRVKYRDFDPKSISVNDHPMTSPSQLRKICGFAAQEDNLLPLLTVKETLMFSAKFRLKEMSSKDREVRVESLLQELGLLHVADSYVGDEENRGISGGERKRVSIGSDMIHNPPILVLDEPTSGLDSSSALHVIELLSFMVKSRKRIVILSIHQPSYKILQYISRFLILSHGSVVHNGSLRSLEKTITKLGFQIPMQLNALEFAMEIIHTLEDSKNSTYDSDITCPIMQEKEEEIGEIHNYTSDDNSKRICSAWYLNFIEILFLCSRFWKVIYRTKQLFLARTMQALVGGFGLGSVYIKVRKDEGGVAGRLGLFAFSLSFLLSSTVEALPIYLQERCVLMKEASRGAYKISSYMVANTLVFLPFLFVVSILFSVPMYLIVGLNPSLLAFAFFIFIVWLIVLMASSLVLFLSALSPDFISGNSMIFTVLVAFFLFSGYFIPKESIPKYWIFMYYVSLYKYPLDALLTNEYWNVRTECFSSSEAESNCLLTGFDVLKSRGLDKDTRWMNVGIMLGFFLLYRVLCWLILTRKVSKATI	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02448	650	Pfam	ABC transporter	85	238	IPR003439	GO:0005524
	Accr3g02448	650	SMART	AAA_5	94	296	IPR003593	GO:0016887
	Accr3g02448	650	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	78	294	IPR027417	-
	Accr3g02448	650	Pfam	ABC-2 type transporter	268	335	IPR043926	GO:0140359
	Accr3g02448	650	Pfam	ABC-2 type transporter	376	584	IPR013525	GO:0016020\|GO:0140359
	Accr3g02448	650	Gene3D	-	73	321	IPR027417	-
	Accr3g02448	650	MobiDBLite	consensus disorder prediction	23	43	-	-
	Accr3g02448	650	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	53	311	IPR003439	GO:0005524
	Accr3g02448	650	ProSitePatterns	ABC transporters family signature.	210	224	IPR017871	GO:0005524\|GO:0016887
	Accr3g02448	650	Coils	Coil	648	650	-	-
	Accr3g02448	650	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	33	635	-	-
	Accr3g02448	650	FunFam	ABC transporter G family member 23	76	309	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02448	Accr-Chr3	50291523	50293688	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g02448	66	343	Calmodulin-binding Proteins	AT2G36910	28.571	7.47e-15	76.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02448	K05681		-	gmx:100783883	939.488