Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02433 ATGGCATTCACAGTAGAGAGATGCGACGAGATAGAGAAGATGGCGGCGATGGTGTTCATGGATGAGAAGTCTTCAGCGACGCCGGTGCCGGCACCGTTCCTGACAAAGACCTATCAGCTGGTGGATGACCCTGTCACCGACCACATTGTCTCTTGGGGTTCGGATGAGTCCTCTTTCGTGGTGTGGAGACCTCCTGAGTTTGCCAGAGATCTCCTTCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAATACCTATGGTTTCAAGAAGGTAGTAGCAGATAGGTGGGAATTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCATCTTCTTTGTGAAATCCACAGGAGAAAAAGCCCTCACAACCACCACCATCTCCATGAACAGCCACCATCTCAAAATCTCTTTTGGAACACAGAAACTACTTGTAGTCCATTATTAATGCCATCACTTTATTCTTCTCCCACTAAACCTGCAACAACAACAACAAGATCAGGAGGATCTTCAGGAACCAGTAATACTACTCATGAAGTCCTAAGAGCACTTTCAGAAGACAATCAGAGACTGAGGAGGAAGAACATGATGCTGTTATCAGAACTCACTCACATGAAGACTCTCTACAATGACATTATTTACTTCATACAGAACCATGTCAAACCAGTGTATAATAATAATAATGATCATATTCCCAAGCTGGTTGAATTAGATTCATCACCAGTCTCACTTGATCATCATCAGACTCAAACTGATGGTGCTAATAAGTTGGATGATTCATCAGCTGCTGGTTCTTCTGTGAAGCTATTTGGGGTCCCACTTGGTAGCAGAAAGAGGTTGCATTCTGAACATATGGATGAAGAAGAAGAATTTATTGAGTGTGTTAATTAA 900 0.4322 MAFTVERCDEIEKMAAMVFMDEKSSATPVPAPFLTKTYQLVDDPVTDHIVSWGSDESSFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKSPHNHHHLHEQPPSQNLFWNTETTCSPLLMPSLYSSPTKPATTTTRSGGSSGTSNTTHEVLRALSEDNQRLRRKNMMLLSELTHMKTLYNDIIYFIQNHVKPVYNNNNDHIPKLVELDSSPVSLDHHQTQTDGANKLDDSSAAGSSVKLFGVPLGSRKRLHSEHMDEEEEFIECVN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02433 299 SUPERFAMILY "Winged helix" DNA-binding domain 30 122 IPR036390 -
Accr3g02433 299 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 FunFam Heat stress transcription factor B-4 25 123 - -
Accr3g02433 299 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 Gene3D - 26 123 IPR036388 -
Accr3g02433 299 Coils Coil 184 204 - -
Accr3g02433 299 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 262 IPR027725 -
Accr3g02433 299 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g02433 299 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02433 Accr-Chr3 49960786 49962406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02433 12 284 HSF AT1G46264 47.634 1.98e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr3g02433 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02433 K09419 - gmx:100776060 320.087