Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02404 ATGGCTGCAAGTTTTGCATCTAAGTGTTCTCGTGTGGGCCATTCTCTGTTTGGTGGGCTAGGCAATAGTTTATCTGGTTTAGTTACCACATCACAAGAGATCATATGCAACAAATTCTTGTCTCAGCAGCAGCAGCAGCAGCAGCGCAGCTTCATCCAGATGAGGACTGTTCTCAAGGTTGTGGATAATTCAGGGGCTAAGAAGGTTATGTGCATCCAACCTCTGAAAGGGAGGAAAGGGGCAAGATTAGGTGACACCATAATTGCTTCAGTAAAGGAAGCCCATCCTAATGGAAAAGTTAAGAAAGGGAAAGTTGTGTATGGCGTGGTCGTGCGTGCTGCAATGCAAAGGGGGCGATGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGGCAGCCGATTGGGACGAGGGTTTTTGGACCTGTCCCACATGAGCTGAGGATGAAGAAACATGTCAAGATTCTTACATTAGCAGGGCACATTGCTTAA 513 0.4678 MAASFASKCSRVGHSLFGGLGNSLSGLVTTSQEIICNKFLSQQQQQQQRSFIQMRTVLKVVDNSGAKKVMCIQPLKGRKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRMKKHVKILTLAGHIA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02404 170 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 52 169 IPR000218 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 SMART Ribosomal_L14_2 51 170 IPR000218 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 Pfam Ribosomal protein L14p/L23e 52 169 IPR000218 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 NCBIfam 50S ribosomal protein L14 52 169 IPR005745 GO:0003735|GO:0006412|GO:0015934
Accr3g02404 170 Hamap 50S ribosomal protein L14 [rplN]. 51 170 IPR000218 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 Gene3D Ribosomal protein L14 51 170 IPR036853 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 FunFam 50S ribosomal protein HLP, mitochondrial-like 51 170 - -
Accr3g02404 170 SUPERFAMILY Ribosomal protein L14 52 169 IPR036853 GO:0003735|GO:0005840|GO:0006412
Accr3g02404 170 ProSitePatterns Ribosomal protein L14 signature. 108 134 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02404 Accr-Chr3 48977446 49008240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02404 62 153 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 4.62e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02404 K02874 - zju:107410789 262.307