Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02363 ATGTCAAGTGGACCAACACATTGGTGTTACGAGTGTCGACATCCAGTTGCAATTGAAGGCGGAGAGGTCATCTGCCCTTACTGTCGTGAAGGCTTTGTGCAAGATCTCAATGAGAGGCGTGAGTTTCAGCCATATAATGCCCTTGAAGAGTTTCATCATATGCCTGGTTTTGTTGATGCTCTACATGCCTTTATGAGAGCTTCTGAACCAAGCTTTGGGCGTCCTTTTGACAATTCCTCGAGGCAGAGAATAGCTGGGCAAGACCCCAACATTGGTGTTAGACAAAGGTCTGATAACGCCCAATTTCCTGAATGGAGTCAAGATTTTTTCAATTCTGGCCCTTCTTTCATGTTTCATGGTATTGGAGTGGAACCTAGGCCAATTGATTTTGGTGGTTTATTGATGGCCCCTGGACTAGAAGCATTTATTCAACAGCTCAGCATGAATAATCATAGAGGTCCTCCTCCGGCCTCCCATTCATCAATTGATGCGATGCCTACCATTAAGATCACCCGAGCGCATCTTCGCTCTGATTCACACTGTCCCGTCTGTCAAGAAAAATTTGAGCTTGGCTCCGAGGCTAGGCAAATGCCCTGTAACCATATCTATCACTCGGATTGTATTGTTCCTTGGTTGGTTCAACATAACTCTTGTCCTGTTTGCCGTGTTGAGTTGCCGCCTCAAGGACAGGGTAGTTCCCGTGGTGGTGGTAGCAGTTACCGTGATAGCTCAAGGAGACAGAACCAGGGAATGAGAAATCCACGATCAACTTGGTGGCCATTTTGA 786 0.4656 MSSGPTHWCYECRHPVAIEGGEVICPYCREGFVQDLNERREFQPYNALEEFHHMPGFVDALHAFMRASEPSFGRPFDNSSRQRIAGQDPNIGVRQRSDNAQFPEWSQDFFNSGPSFMFHGIGVEPRPIDFGGLLMAPGLEAFIQQLSMNNHRGPPPASHSSIDAMPTIKITRAHLRSDSHCPVCQEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQGSSRGGGSSYRDSSRRQNQGMRNPRSTWWPF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02363 261 FunFam E3 ubiquitin-protein ligase RING1-like 144 228 - -
Accr3g02363 261 CDD RING-H2_RNF126-like 181 222 - -
Accr3g02363 261 SMART ring_2 181 221 IPR001841 -
Accr3g02363 261 SUPERFAMILY RING/U-box 161 228 - -
Accr3g02363 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 228 IPR013083 -
Accr3g02363 261 MobiDBLite consensus disorder prediction 75 94 - -
Accr3g02363 261 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Accr3g02363 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 226 - -
Accr3g02363 261 MobiDBLite consensus disorder prediction 231 261 - -
Accr3g02363 261 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Accr3g02363 261 Pfam Ring finger domain 180 222 IPR001841 -
Accr3g02363 261 MobiDBLite consensus disorder prediction 225 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02363 Accr-Chr3 47807300 47808085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02363 106 261 C3H Transcription Factor Family AT1G68180 33.333 9.21e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02363 K11982 - qsa:O6P43_020907 308.531