Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02360 ATGTTGGAGAAAAAGAAGGAGAACCAAGGGTTCGATCAAGAATCCTCCGACGAAGAAGAGAAGATGAGCGAAAAGCCGTTTTCGTCTTACTCAGAGCCCCACGAAGGAAAATCCAAGATTAAAAGTAATGGAGCTTCAGGTCCAGCTCCAGCTCCAGGTGGAGCTTCAGGTTCATCAGTTAGAGTTTGTGATTTCTGTGGAAAACAGTTCAATTCTGGAAAAGCCCTAGGAGGACACAGGAGATATCACATCCAAGCTCAGAAGAAATTGGAGGCTCAGAATCTGGCTCAACAAAAACAAGAAAAAGTCAATTATACCCTAAAAAACAAGGCCAAGGATTTAGTCATTCCCGATTATGATGATAATAATAATCTCATCAAATCAAGAATTGTGAATTTCAATTCTTCGTCTTCGAGATCTTTCCGTTGTTGTGTCTGCGACAAGGATTTCCCATCGGAAAAGTCACTGTACGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCGTTACCGATAACAATCTAGATCTTTCTTCTCCTTCTGCAGAACAATTGAACAATGGTTCTTCATCTTCGACCTTGGAAGAATCATCGTCACCAGTACCAGTTGATCTTTCTTCATCTTGTTCTGGAAGCAGCTGGCTTAAGAAAGATAAGAGAGGAAGAGTCTCTGGAGAAGGAGAAGCAGAAGCAGCTCATATTGCAGCTATCACCCTTATACATATGCATCTCTATGGTAATGATGAATTGGAAGCTCAAACCCTTCGTGGTCGCGAGGCTACTCCTGAAGAAGCAGCACTATTACCAGTCAAGAAAAGGAAGAACAATGTCATGAAGAAGAACCATGTTGCTGATTACAAGGAGAAATTAGATGGTAGAGATGGGAATGAAGAATTGGAAGCTGAGAATAATATGTGGGATGTGAAAGTGAAAAGCTTAATCAAAGAGAAGAAGCTGAATAAGCAGAACAAGAAGCTGAAATTAGGTGCAGAGATTAAGTCAGAAGGAGAACCGCTGGTGATAAGAACTTTGAAGCAAGAAGAAGTGAAGCCACAAAGCTATGTATGTGGCATCTGTAATAAGTCTTTCTCATGTTTTCAAGCTTTAGGTGGACACAAATCCAAACACAACAGAGAGAAGAACATAGCTAAAAGCATGAAGGGCAAGGAACTAATGGAACAAAGTGAGGAAAAAGAAGAAGAAGAAGACAAGATGTGCATCAATGGAACTTTATTGTCAAGTGCAGGATTGAGTGGTGAAGAAGAAGAAGCGTCTCCGATTAGTAGTGAAGAGAGATTAGCAATAAGTTCGAACGATAATAATGAGGATAATGGTAATGGAGAGGAAGTGGGAGAGGCAAGTCAACAATCTGCTTCGAAAATAAGGGGATTTGATCTGAATATGCCCTATGTTTTGGAGCACGAAGCAACTGATTTATAA 1458 0.4074 MLEKKKENQGFDQESSDEEEKMSEKPFSSYSEPHEGKSKIKSNGASGPAPAPGGASGSSVRVCDFCGKQFNSGKALGGHRRYHIQAQKKLEAQNLAQQKQEKVNYTLKNKAKDLVIPDYDDNNNLIKSRIVNFNSSSSRSFRCCVCDKDFPSEKSLYGHMRSHPEREWRGMNPPFVTDNNLDLSSPSAEQLNNGSSSSTLEESSSPVPVDLSSSCSGSSWLKKDKRGRVSGEGEAEAAHIAAITLIHMHLYGNDELEAQTLRGREATPEEAALLPVKKRKNNVMKKNHVADYKEKLDGRDGNEELEAENNMWDVKVKSLIKEKKLNKQNKKLKLGAEIKSEGEPLVIRTLKQEEVKPQSYVCGICNKSFSCFQALGGHKSKHNREKNIAKSMKGKELMEQSEEKEEEEDKMCINGTLLSSAGLSGEEEEASPISSEERLAISSNDNNEDNGNGEEVGEASQQSASKIRGFDLNMPYVLEHEATDL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02360 485 Coils Coil 302 322 - -
Accr3g02360 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 387 IPR013087 -
Accr3g02360 485 MobiDBLite consensus disorder prediction 177 220 - -
Accr3g02360 485 SUPERFAMILY beta-beta-alpha zinc fingers 62 163 IPR036236 -
Accr3g02360 485 MobiDBLite consensus disorder prediction 163 229 - -
Accr3g02360 485 Gene3D Classic Zinc Finger 61 163 - -
Accr3g02360 485 MobiDBLite consensus disorder prediction 380 485 - -
Accr3g02360 485 MobiDBLite consensus disorder prediction 1 39 - -
Accr3g02360 485 Pfam C2H2-type zinc finger 61 83 - -
Accr3g02360 485 Pfam C2H2-type zinc finger 360 384 - -
Accr3g02360 485 Pfam C2H2-type zinc finger 141 165 - -
Accr3g02360 485 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 20 477 IPR044653 GO:0003700
Accr3g02360 485 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Accr3g02360 485 Gene3D Classic Zinc Finger 342 414 - -
Accr3g02360 485 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Accr3g02360 485 SUPERFAMILY beta-beta-alpha zinc fingers 357 387 IPR036236 -
Accr3g02360 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Accr3g02360 485 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
Accr3g02360 485 MobiDBLite consensus disorder prediction 380 400 - -
Accr3g02360 485 MobiDBLite consensus disorder prediction 436 468 - -
Accr3g02360 485 MobiDBLite consensus disorder prediction 1 57 - -
Accr3g02360 485 SMART c2h2final6 61 83 IPR013087 -
Accr3g02360 485 SMART c2h2final6 360 382 IPR013087 -
Accr3g02360 485 SMART c2h2final6 141 163 IPR013087 -
Accr3g02360 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02360 Accr-Chr3 47670669 47672126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02360 62 174 C2H2 Transcription Factor Family AT2G26940 35.398 1.48e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g02360 zf-C2H2_6 6.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02360 - - pcin:129302761 384.415