Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02359 ATGAGGGAAAAGCCGTTTTCTTCTTACTCGAAGCTCCACGAACGAAAATCTAAGATTAAAATCAATGGAGCTTCAATTGCAGCTCTAGGTCTAGGCTCAGGTTCATCAGTTAGGGTTTGTGATTTCTGTGGAAAACAGTTCAATTCAGGAAAAGCCCTAGGAGGCCACAGGAGACATCACATCCTAGCTCAGAGAAAGATGAAGGAGCAGCAACAAGAAAAGATCAATTATATCCTAAGAATCAAGACCAAGAATTCGGTCATCCACCATAATTATAATAATAATCTCATGAAATCGAAGATTGGGAATCCCAATTGTTCTTCTTGGATACGTTTCCATTGCCCTGTGTGCGACAAGGATTTTCCATCGGAGAAGTCACTGTGCGGCCATATGAGAAATCATCCCGATAGAGATTGGAGAGGTTTGAACCCTCCTTTCACTTCTACAACTGATAGCGCTCTAGCCTCTTCTGCTTCTTCTTCTTCAGAAGAGTTTATGAGAGAAAAAGATCATCAAAATCACAAGAGCAATAATAATGGGTCTTCATCTTCAACTTCAGGCGAATCATTATCAGTACCGGTTGATGTTTCTTCATCTTGTTCTGAAAGTAGCTCGCTCAAGAAAGATATGAGAGGAAGAAAAAGCATTGGAGAAGCAGAAGCTGCTCACGTTGCAGCTCAAATCCTTATGGATATCCATCTCTATGGTCACTCCCAACTTCGTGCTGGTCTTACTCCTCGCGAGCCTACTCCTGAAGCTGCACAATTACCTGTCAAGAAAAGGAAGAACAATATGATGAACAACAATGTTGGCGGTTCTTCTTCTTCACCATCTGGAAAACAAAGCTTGGACAATCGCAAGGAGAAATTAGAGGGTAGTGATGGGAATGAAGAATTGGAAGCTGAGAATAATATGTGGGATATGAAAGTGATCGACTTAATCAAAGAGAAGAAGAAGCTCAATATGAAGAAGAGAAAATTAGGTACCGAGATGATCAAGTCAGAAGGAGAACCGCTGATTATAAGAACTGTGAAGCAAGAAGAAGTGAAGCCATCGCAAAGCTATGTGTGTGACTACATGTAA 1083 0.4109 MREKPFSSYSKLHERKSKIKINGASIAALGLGSGSSVRVCDFCGKQFNSGKALGGHRRHHILAQRKMKEQQQEKINYILRIKTKNSVIHHNYNNNLMKSKIGNPNCSSWIRFHCPVCDKDFPSEKSLCGHMRNHPDRDWRGLNPPFTSTTDSALASSASSSSEEFMREKDHQNHKSNNNGSSSSTSGESLSVPVDVSSSCSESSSLKKDMRGRKSIGEAEAAHVAAQILMDIHLYGHSQLRAGLTPREPTPEAAQLPVKKRKNNMMNNNVGGSSSSPSGKQSLDNRKEKLEGSDGNEELEAENNMWDMKVIDLIKEKKKLNMKKRKLGTEMIKSEGEPLIIRTVKQEEVKPSQSYVCDYM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02359 360 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 108 227 - -
Accr3g02359 360 MobiDBLite consensus disorder prediction 282 301 - -
Accr3g02359 360 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Accr3g02359 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Accr3g02359 360 MobiDBLite consensus disorder prediction 242 301 - -
Accr3g02359 360 SMART c2h2final6 38 60 IPR013087 -
Accr3g02359 360 SMART c2h2final6 112 134 IPR013087 -
Accr3g02359 360 Coils Coil 296 316 - -
Accr3g02359 360 Pfam C2H2-type zinc finger 38 60 - -
Accr3g02359 360 Pfam C2H2-type zinc finger 112 136 - -
Accr3g02359 360 Gene3D Classic Zinc Finger 13 138 - -
Accr3g02359 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 60 IPR013087 -
Accr3g02359 360 MobiDBLite consensus disorder prediction 135 212 - -
Accr3g02359 360 MobiDBLite consensus disorder prediction 143 162 - -
Accr3g02359 360 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Accr3g02359 360 MobiDBLite consensus disorder prediction 176 205 - -
Accr3g02359 360 MobiDBLite consensus disorder prediction 261 281 - -
Accr3g02359 360 SUPERFAMILY beta-beta-alpha zinc fingers 39 134 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02359 Accr-Chr3 47665472 47666554 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02359 39 145 C2H2 Transcription Factor Family AT2G26940 33.051 3.82e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g02359 zf-C2H2_6 3.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02359 - - pcin:129302761 241.891