Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02357 ATGGATTCTGAAGAAGAAAATAGGTTACTTTCTCATGAAGATGATGGGCTTGATCGTCATCAGGAAGAGAAGGATCAGGAGACCTCCGACGAGGAAGGGAAGATGAGCCAAAAGCCGTCTTCGTCTTACTCAAAGCTAGGAAAATCAACTTCAGGTGAAGGTGACGGTGAAGGTTCATTAGTTCATATTTGTGATTTCTGTGGGAAAAAATTCAAGTCAGGAAAAGCCCTAGGAGGCCACAGAAGATACCACATCCAAGCTCAGAGAAAGATGGAAGAACAACGAAATAAGGCCAGTTATACCCTAAGAATCAAGTCCACCAATTTGGTCATCCACAATAATAATAATAATCTCATCAAATCGAATAGTATTGGGAATTCTTCTGGGAGATGTTTCCGTTGTCTTGTGTGCAACAAGGATTTTCCATCAGGGAAGTCACTGTGCGGCCATATGAGATCTCATCCAGACAGAGATTGGAGAGGTATGAACCCTCCTTTCGTTACTACTGATAACGCTCTAGCTTCTTCTTCTTCAGAAGAGTTGATTAAAGACCAAGATCATCAAAATCGCAACAGTAGCTCTTCACCTTCAACTGCAGAAAAATCATTATCAATACCGGTTGATTCTTCCTCATCTTGTTCTGAAAGCAGCAGGCTCAAGAAAGATATGAGAGGGAGAAAACGCATTGGAGAAGCAGAAGCTGCTCATATTGCAGCTCTAATCCTGATGGATATGCATCTCGTTGGTAACTACCACCTTCCTCATCCTCTTCCAATTCGCGAGCCTAGTCCTGAAAAAGCAGCAGTCTTACCAGTCAAGAAAAGGAAGAAGAATGTGATGAAGAACCATGTGGCTGGTTCTTCTTCTTCACCAGCTGGAACGAAAAGCACGGATAATTGCAAGGAGAAAATAGAGGGTACTGATGGGGATGAAGAATTGAAAGGTGATATTAAAGTGATCAGTTTAAAGAAAGAGAAAAAGAATCTCAATAAGAAGATGAAATTAGGTCCAGAGATGATCAAGTCAGAAGAAGAAACTGTGAAGCAAGAAGAAGTGAAGCCATCACAAAGCTATGTATGTGACACCTGTAATAGATCTTTCCCATGTTTTCAAGCCTTAGGAGGACACAAAACCAAACACAGGAATAACATAGTTAAAAGCATGAAGGGCAAGGAAGTGGTGGAACAAAGACAAGAAGAAGAACAAGTGGAAGAAGACAAGATTTGCATTAATGGAGCATTAAGTGGTGAAGAAGCAGCGGCTCTGATTAGTAGTGGGGAGAGATTATTAATAAGTTCGATTGATAATGAGAATAACAGTCCACAAAGACCAGAAGAAGAACGAGTGGAAGAAGAAGACAAGATTTGCATTAATGGAGCATTAAGTGGTGAAGAAACTGCGGCTCTGATTATTAGTAGTGAAGAGACATTATTAATAACTTCGAATGATAATGAGAATGACAGTCCGCAAAGACAAGAAGAAGAACAAGTGGAAGAAGAAGACAAGATTTGCATTAATGGAGCATTAAGTGGTGAAGAAGCAGCGGCTCTGATTAGTAGTGAAGAGAAATTAGTAATAAGTTCCAATGATAATGAAAATAACAGTAATGAAGAGGAAGTGGAAGAAGCAAGACAACAATCTGCTTCCAAAATAAGGGTTTTTGATCTGAATGTGCCAAGTTCGAATGATAATGAAAATAACAGTAATGAAGCGGAAGTGGAAGAAGCAAGACAACAATCTGCTTCGAAAATAAGGGGTTTTGATCTGAATGTGCCAAGTTCGAATGATAATGAAAATAACAGTAATAAAGAGGAAGTGGAAGAAGCAAGACAACAATCTGCTTCAAAAATAAGGGGTTTTGATCTGAATGTGCCTTTTGTTTTGGAGGACGAAGCAACTGATTTATAA 1908 0.3947 MDSEEENRLLSHEDDGLDRHQEEKDQETSDEEGKMSQKPSSSYSKLGKSTSGEGDGEGSLVHICDFCGKKFKSGKALGGHRRYHIQAQRKMEEQRNKASYTLRIKSTNLVIHNNNNNLIKSNSIGNSSGRCFRCLVCNKDFPSGKSLCGHMRSHPDRDWRGMNPPFVTTDNALASSSSEELIKDQDHQNRNSSSSPSTAEKSLSIPVDSSSSCSESSRLKKDMRGRKRIGEAEAAHIAALILMDMHLVGNYHLPHPLPIREPSPEKAAVLPVKKRKKNVMKNHVAGSSSSPAGTKSTDNCKEKIEGTDGDEELKGDIKVISLKKEKKNLNKKMKLGPEMIKSEEETVKQEEVKPSQSYVCDTCNRSFPCFQALGGHKTKHRNNIVKSMKGKEVVEQRQEEEQVEEDKICINGALSGEEAAALISSGERLLISSIDNENNSPQRPEEERVEEEDKICINGALSGEETAALIISSEETLLITSNDNENDSPQRQEEEQVEEEDKICINGALSGEEAAALISSEEKLVISSNDNENNSNEEEVEEARQQSASKIRVFDLNVPSSNDNENNSNEAEVEEARQQSASKIRGFDLNVPSSNDNENNSNKEEVEEARQQSASKIRGFDLNVPFVLEDEATDL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02357 635 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Accr3g02357 635 SMART c2h2final6 132 154 IPR013087 -
Accr3g02357 635 SMART c2h2final6 62 84 IPR013087 -
Accr3g02357 635 SMART c2h2final6 358 380 IPR013087 -
Accr3g02357 635 MobiDBLite consensus disorder prediction 600 614 - -
Accr3g02357 635 SUPERFAMILY beta-beta-alpha zinc fingers 62 154 IPR036236 -
Accr3g02357 635 MobiDBLite consensus disorder prediction 1 34 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 583 599 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 282 297 - -
Accr3g02357 635 Coils Coil 526 546 - -
Accr3g02357 635 Pfam C2H2-type zinc finger 358 381 - -
Accr3g02357 635 Pfam C2H2-type zinc finger 132 156 - -
Accr3g02357 635 Pfam C2H2-type zinc finger 61 84 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 282 307 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 35 49 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 433 452 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 188 214 - -
Accr3g02357 635 SUPERFAMILY beta-beta-alpha zinc fingers 356 382 IPR036236 -
Accr3g02357 635 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Accr3g02357 635 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Accr3g02357 635 MobiDBLite consensus disorder prediction 155 226 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 487 501 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 481 501 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 1 56 - -
Accr3g02357 635 Gene3D Classic Zinc Finger 60 154 - -
Accr3g02357 635 ProSiteProfiles Zinc finger C2H2 type domain profile. 358 380 IPR013087 -
Accr3g02357 635 MobiDBLite consensus disorder prediction 528 620 - -
Accr3g02357 635 MobiDBLite consensus disorder prediction 550 567 - -
Accr3g02357 635 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Accr3g02357 635 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 25 564 IPR044653 GO:0003700
Accr3g02357 635 ProSitePatterns Zinc finger C2H2 type domain signature. 360 380 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02357 Accr-Chr3 47653072 47655052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02357 62 165 C2H2 Transcription Factor Family AT2G26940 35.780 4.20e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g02357 zf-C2H2_6 1.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02357 - - pcin:129302761 310.457