Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02352 ATGGGAAATTCCTGTAGGAAACCCATTGTTCACGTCTCTTCCTCTAACATTTCTGGAAAGGGGAAGTCTCAAAGTGAGGTAAGTAAGAATTCAAATTCTTCAGACGGAAAAGCTGCATCACAAACTTTAGGACCAACCATCGATGGATCAATCTCTTCAAGTCTTAAATCCTTCAGCTTCAATGATCTAAGAGAAGCCACAAGGAATTTCAGACAAGAGAACCTAATTGGGGAGGGAGGGTTTGGATTTGTGTACAAGGGATGGATTAATGAGAGCTCCTTTGCTCCCACGAGACCGGGGAGTGGGATTATGGTGGCCATCAAGAAACTTAAGCCAGAAAGTTTTCAAGGCCACAAGGAATGGCTTGCGGAAGTCAATTATTTAGGTCAACTTCACCATGAAAATGTGGTTAAACTTATTGGTTATTGCTCAGACGGCAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAGAGGAAGTTTGGAAAATCATTTATTTAGAAAAGGTGTTCAGCCCATATCATGGGCTGCACGGATAAATATTGCAGCTGGCGTTGCTAGAGGTTTAGCATTTTTGCATACCTTGGATGCAAATGTTATTTACCGTGACTTAAAGGCTTCTAATGTATTACTTGATTCGGACTTCAGCCCTAAGCTTTCAGATTTTGGGTTGGCAAGAGATGGTCCTACTGGAGACAACACTCATGTTTCAACCAGAATTATTGGAACTCAAGGTTATGCTGCGCCAGAGTATGTTGCTACAGGTCACTTGACACTGAGGAGCGATGTGTACAGCTTTGGTGTTGTCTTGTTAGAGTTACTGACAGGTAGAAGGGTGGTAGAGGCTGAGAAACCCGGAAACTCACGGGAAACTCTGGTCGATTGGGCGATGCCATTTCTCAGAGATGGCAAGCGGATTTCGAGGGTCATGGATATGAGGCTATGTGGTCAGTACCCCAAAAAAGGAGCTCAAGCTGCAGGTGCACTTGCACATCAATGCCTAAATGCAGATCCAAAATACAGACCAACTATGAAAAGTGTACTTGCCAAGTTGGAAGAACTTCACTCCTCAAACACAACAATCCCAAGTACCCCGCCAAAGTCTGAGTCTAGGAACCATACCAGCAAGCATGCTCGTCATGCCCTAAATTCAATGAGAAATACACGCTGA 1170 0.4368 MGNSCRKPIVHVSSSNISGKGKSQSEVSKNSNSSDGKAASQTLGPTIDGSISSSLKSFSFNDLREATRNFRQENLIGEGGFGFVYKGWINESSFAPTRPGSGIMVAIKKLKPESFQGHKEWLAEVNYLGQLHHENVVKLIGYCSDGKNRLLVYEFMQRGSLENHLFRKGVQPISWAARINIAAGVARGLAFLHTLDANVIYRDLKASNVLLDSDFSPKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTLRSDVYSFGVVLLELLTGRRVVEAEKPGNSRETLVDWAMPFLRDGKRISRVMDMRLCGQYPKKGAQAAGALAHQCLNADPKYRPTMKSVLAKLEELHSSNTTIPSTPPKSESRNHTSKHARHALNSMRNTR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02352 389 CDD STKc_IRAK 76 354 - -
Accr3g02352 389 SMART serkin_6 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g02352 389 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Accr3g02352 389 MobiDBLite consensus disorder prediction 8 45 - -
Accr3g02352 389 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 364 - -
Accr3g02352 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g02352 389 Gene3D Phosphorylase Kinase; domain 1 47 155 - -
Accr3g02352 389 MobiDBLite consensus disorder prediction 356 389 - -
Accr3g02352 389 FunFam Serine/threonine-protein kinase BIK1 39 155 - -
Accr3g02352 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Accr3g02352 389 SUPERFAMILY Protein kinase-like (PK-like) 52 374 IPR011009 -
Accr3g02352 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Accr3g02352 389 Pfam Protein kinase domain 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g02352 389 MobiDBLite consensus disorder prediction 1 45 - -
Accr3g02352 389 PANTHER OS01G0588500 PROTEIN-RELATED 30 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02352 Accr-Chr3 47465023 47468640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02352 56 351 Glycoside Hydrolase AT3G07070 51.171 8.15e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr3g02352 Pkinase 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02352 - - gmx:102664409 582.793