LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02303	ATGGAACATCCTCTCGGAGGAGAATCTAGCACTTCAAACTCAACAGATGAATCAAAATGGAAATATGATGTTTTCTTGAGTTTTGCAGGAGAAGACACTCGTTTGAGGTTTACGAGTCAGTTGGATGAAGCTTTCAAAAGAAGTGGGATCAAAACGTTTCGGGATGATGTGGATCTTGAGAGAGGGAGAGACATAAGGCAAAATCTCTTTCAAGCAATTGAGGATTCTCTATGTGCAGTCGTTGTTATCTCTGAAAAGTATGCAAATTCTAAATGGTGTTTGGATGAGCTTCAAAAGATTCTTGAGTCTCGAAATACATTGCATCGACGAGTGTTTCCTATCTTCTATGATGTTGACCCAGCGGATGTGAGAAAGCAAGAAAAAAATTTTGGGAACGCCTTGGCTGAACATGAGAAAAAATTTGGAAAAGCCACAAAGAAAGTGCAGAATTGGAGAAATGTTTTGTTTGAAATTAGCAACTTGTCTGGATGGGACACCAGGGGCAAGAATGAAGCAGATGTGATAAAAAATATAGTTGGAGAGGTGTGGACTTATTTAATTTCTAAATTGCCATCTTATAATGACAATCTGGTTGGGATTGACTCAAGAGTGGTTGATCTGATGCCACTCTTAGACGTTGGGTCTAATGAGGTTCGTTTTGTAGGGATATGGAGTATGGGCGGTGCTGGTAAAACAACTCTTGCTAGAGTTGTTTTTGAAAAATTATCCAACATGTATGAAATGTGTTGCTTTCTTGCCAATGTTAGAGAAACTTTGCAAAGAGAAGATCGAGTCTCTGTGCAGAAAAGGATTCTTTCACATCTCAAAGCAACGGATACAGAAATTTTGGATGATTATGAAGGAAGGAAGATGATAAGAAAGCTTTTGTACGGTAAAAAGGTTCTTATTGTCCTTGATGATGTAGATAATCATAACCAATTAAAGAATTTGGTTGAAAGTCCAGATTGGTATGGTGAAGGAAGCAGAATAATTATTACAACAAGAGATAGCCATGTACTCACCGCATTAAGAGTGACAAGAATATATGAGATGAAGATGATGAAGACAGATGAATCTCTTCAACTCTTTTGTAACAAAGCATTCCACAAAGATCAGCCTGAAGAGAATTATTCGAAATTAACTGAATCTGTGGTTGAATATGCTGGAGGTCTTCCCTTGGCACTTGAAATTTTGGGTTCTTTTCTTTGCGGGAGAAGTAAAGCTGAGTGGATAGATGCTTTAGATAGATTGAAGCGAATTCCAGACAATAACATTAATGAAGTACTTAGAATAAGTTATGATGGGTTGGACGAGGAAGAGAAGACAATATTTTTAGATATTGCTTGTTTTTTTAAGGGTTGGAAGAAAAAGGAAGTGATTTTGCTCTTGAAAGGTTGTGATATTCACTCAAAAATTGGAATAAAGGTCTTGATTGAAAAAACTTTACTTGTTGAAACGGGAGCTTGCACACTACAGATGCATGATTTACTTCAAGAGCTGGGTAGGTATATAGTTCGTCAAGAATCTCCAAATGTTGGTGAACGTAGTAGGTTGTGGGAATTTGATGACATCAAGGAAGTATTGGAAAATAACAAGGGATCTGAGAAAATACAAGCTATTGTTGTGCCGCAAAAAAATCGTATTGTGAATATACATTCTGAAGCCTTTTCAAAAATGAGTAACATTAGATTACTCATCTTCAGTCTGAAGGAGTTTAGTACAGTCAAGTCACCAAGGGGATTGAAACTTTCTAGTGCATTAAAAGTTGTTCGATGGCCAAATTTTCAACTCAACGCTCTTCCACTTGAGAATCCATTGGAGAAACTCGTTCATATTGAAATGCCTAATAGCCAAATAAAGCAACTTGGGAATGGCATACAGATTATGAGAAAGTTGAAATTCATCAACTTGAGAAATTCTATGAATTTGGTTGAAACTCCAGACTTCTCAGGAATACCATATTTAGAATATCTATGTCTTTCTCGATGCAAATCCCTTGTCAGGGTTCACCAGTCACTTGGAAAGTTAAAAGCGCTTGCTATGGTGGAATTGGAGCTTTGTATGAATCTTGAGATTCTACCAAGAAAATTGGAAACTAATTCTTTGACGATGTTAAATCTTAGAGGGTGTGAAAAACTTGCAGTGCTCCCAGAGTTTGAGGAAGATGATTTTGGTAGTTTATCATCACTGGTTGCATTGGATCTAAGCTGGAACAATTTTGTTAATCTACCCTCTGGTTGCTTCTCTAGTCTTTTTCGACTTCGATTTCTCTCATTGGACTCTTGCAAAAGCCTTAAGTCATTGCCAAGGCTTCCGCCACGGTTATTTGGATTACATGCAACCTCTTGTCTCTCAATGGAAACACCTTTATCATCAGATGAACATATATGGAATTTGGTTGCTTCACTTGACCATGAGTGTCGTGGGCGAACTAAGTATTATGTAATCTCTGATGAGGACTATGATGACGATAGGCCACTTGATGAGACAAAAAGTGCTCCTCTGAGAGATTTCTTTGCAATTATTCCAGGACGCGGAATACCATCATGGTTTTCAATGGATACTTTGGAAATGCGATGGCATCATTGTGTGATAGAAGTGAATATACCTCGAGATTTTCGTGACAGTGAATGGTTAGGAATTGTTGTGTGCTTGCCTGTCACATTTTTCAGTAGTATGTTAAAAATTTATTGGAGTACCAAGGCTCCAGAAGATGATGATTTTATACACAAAGAGTGGGGGCATGGTACTGCCCTCTTTTCTCGTTCTGATTGCCAGTGCATAATGGTGTTGGAATTAAATGAGGAAACATGTTGGCAACACCTAAGAGGCCATAACAATTCCCTTCACATTAAATTTGAAATTTACGGAGACCGTGACGCTGAGTTATGTGGATGTGGGTGGAGATTAATACGTAAAGAAGAAATACGACAAGCAGAGAGGTGCAATCTCAATGATTTCAACCAAGTCACCCAACCACAGCTTGCTACTCCTCATGAGGTCAGCCTTCCCTGGAGCGTACTTGGCTACTACATTCGCAGCAAGTAG	3048	0.3835	MEHPLGGESSTSNSTDESKWKYDVFLSFAGEDTRLRFTSQLDEAFKRSGIKTFRDDVDLERGRDIRQNLFQAIEDSLCAVVVISEKYANSKWCLDELQKILESRNTLHRRVFPIFYDVDPADVRKQEKNFGNALAEHEKKFGKATKKVQNWRNVLFEISNLSGWDTRGKNEADVIKNIVGEVWTYLISKLPSYNDNLVGIDSRVVDLMPLLDVGSNEVRFVGIWSMGGAGKTTLARVVFEKLSNMYEMCCFLANVRETLQREDRVSVQKRILSHLKATDTEILDDYEGRKMIRKLLYGKKVLIVLDDVDNHNQLKNLVESPDWYGEGSRIIITTRDSHVLTALRVTRIYEMKMMKTDESLQLFCNKAFHKDQPEENYSKLTESVVEYAGGLPLALEILGSFLCGRSKAEWIDALDRLKRIPDNNINEVLRISYDGLDEEEKTIFLDIACFFKGWKKKEVILLLKGCDIHSKIGIKVLIEKTLLVETGACTLQMHDLLQELGRYIVRQESPNVGERSRLWEFDDIKEVLENNKGSEKIQAIVVPQKNRIVNIHSEAFSKMSNIRLLIFSLKEFSTVKSPRGLKLSSALKVVRWPNFQLNALPLENPLEKLVHIEMPNSQIKQLGNGIQIMRKLKFINLRNSMNLVETPDFSGIPYLEYLCLSRCKSLVRVHQSLGKLKALAMVELELCMNLEILPRKLETNSLTMLNLRGCEKLAVLPEFEEDDFGSLSSLVALDLSWNNFVNLPSGCFSSLFRLRFLSLDSCKSLKSLPRLPPRLFGLHATSCLSMETPLSSDEHIWNLVASLDHECRGRTKYYVISDEDYDDDRPLDETKSAPLRDFFAIIPGRGIPSWFSMDTLEMRWHHCVIEVNIPRDFRDSEWLGIVVCLPVTFFSSMLKIYWSTKAPEDDDFIHKEWGHGTALFSRSDCQCIMVLELNEETCWQHLRGHNNSLHIKFEIYGDRDAELCGCGWRLIRKEEIRQAERCNLNDFNQVTQPQLATPHEVSLPWSVLGYYIRSK	1015

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02303	1015	SUPERFAMILY	L domain-like	544	795	-	-
	Accr3g02303	1015	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	164	IPR035897	-
	Accr3g02303	1015	Gene3D	Ribonuclease Inhibitor	492	794	IPR032675	-
	Accr3g02303	1015	Gene3D	-	354	437	IPR042197	-
	Accr3g02303	1015	SMART	till_3	21	161	IPR000157	GO:0007165
	Accr3g02303	1015	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	447	IPR027417	-
	Accr3g02303	1015	SUPERFAMILY	"Winged helix" DNA-binding domain	424	529	IPR036390	-
	Accr3g02303	1015	Gene3D	-	15	186	IPR035897	-
	Accr3g02303	1015	ProSiteProfiles	TIR domain profile.	20	190	IPR000157	GO:0007165
	Accr3g02303	1015	Pfam	NB-ARC domain	215	420	IPR002182	GO:0043531
	Accr3g02303	1015	FunFam	Disease resistance protein (TIR-NBS-LRR class)	355	437	-	-
	Accr3g02303	1015	PRINTS	Disease resistance protein signature	220	235	-	-
	Accr3g02303	1015	PRINTS	Disease resistance protein signature	295	309	-	-
	Accr3g02303	1015	PRINTS	Disease resistance protein signature	388	402	-	-
	Accr3g02303	1015	PRINTS	Disease resistance protein signature	725	741	-	-
	Accr3g02303	1015	FunFam	Disease resistance protein (TIR-NBS-LRR class)	18	188	-	-
	Accr3g02303	1015	Gene3D	-	187	348	IPR027417	-
	Accr3g02303	1015	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	785	IPR044974	GO:0006952
	Accr3g02303	1015	Pfam	TIR domain	21	195	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02303	Accr-Chr3	44689019	44693755	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g02303	18	787	WRKY Transcription Factor Family	AT4G12020	29.949	5.83e-87	305

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02303	-		-	pcin:129303509	879.782