Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02297 ATGGAAAAAGCTTGTACTGATGCAGATGCTGGAGTTCGAAGTGATGGAGATTCCTTGTCAGATCCTGCTTATTATCATCGTCTACAGTCCAGGCGACCAAACCTCACCTCTTTGCAGATACCAGTAGGGTCAGTGGAAAGTGTATTATCCTCTTCTGCAAAGACAGATGTTGTATTACAGCCAAGTCCAGGTTCCTCTCGAGGACTGCCTCCAAGATCAAATTTAGCAAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGTCTTAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATACCCTCATCAGATGGAGCTTTGGACAAGCCTTCAACCTCACGGTCCCTTTCTTTAAATAAGGTTTTGTTTCCTTCATCAGCAAAAGCATCAAATTCACTACCAGTTACACCAATTGCAAATACAGTTGCAGAGACTGTGCATGGAAGTCATCTAGGAAGTGATCCTGACTTAAGTGTACGTTTCACGAAAATGGAAGTCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATATCAAATCCTCTAGTTTAAAGCGAACAGGTTCTAGTGGTTTGATCCGAGTAATTTCAGCAAGACGACATCCTGCAGCTGTTAATGACTATTCAATTGATAAAACTTCAGTGCCAGAGATTGCCATTGAAGATGCTACTGAGGACATTCCTGAAAAAGAAGCAGTCTGTAGGATTTGTTTAATGGAGCTGGGGGAAGGTGGGGATACCCTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCACTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGCATAAAAGGAAACAAGACATGTGATGTTTGCAACCAGGAAGTCCGAAACCTTCCAGTGACTCTATTGAAAATCCAAAGTCCTCATCCTACTGCTGAACGGTCATCAAATACACCACAGCAGATAGAAGTTTCTTTTCACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCTCTTGCCATCTCTCTACCTTTTGCCTGCACGTTTGGCCTTGTTGCTTCTTTGCTTGCTTCGACCATGGTGAGCAGAGATTACATGTGGGCTTATGCGTGCTTCCAGTTTGCAATTGTCATCCTTCTGGCTCATGTATTTTACACAATACGTAAATTAAATGGTGTTCTGTCGGTTATGCTTTCTTCACTTGCTGGATTTGCGATAGCAATGGCCGTAAATTATCTGCTCAAGGTATTTTTAAATTGGAGATTTAGAAGGCAGATACAATCTATTAATCAGACCCTAACAGAGCAGGGACAAGGACAGCATAATAGGCGTCAAAGACAGTAG 1413 0.4239 MEKACTDADAGVRSDGDSLSDPAYYHRLQSRRPNLTSLQIPVGSVESVLSSSAKTDVVLQPSPGSSRGLPPRSNLARVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGALDKPSTSRSLSLNKVLFPSSAKASNSLPVTPIANTVAETVHGSHLGSDPDLSVRFTKMEVKHHMTRSFSVPVNIKSSSLKRTGSSGLIRVISARRHPAAVNDYSIDKTSVPEIAIEDATEDIPEKEAVCRICLMELGEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCNQEVRNLPVTLLKIQSPHPTAERSSNTPQQIEVSFHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAISLPFACTFGLVASLLASTMVSRDYMWAYACFQFAIVILLAHVFYTIRKLNGVLSVMLSSLAGFAIAMAVNYLLKVFLNWRFRRQIQSINQTLTEQGQGQHNRRQRQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02297 470 Pfam RING-variant domain 245 292 IPR011016 GO:0008270
Accr3g02297 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 300 IPR013083 -
Accr3g02297 470 ProSiteProfiles Zinc finger RING-CH-type profile. 237 299 IPR011016 GO:0008270
Accr3g02297 470 CDD RING_CH-C4HC3_MARCH 245 293 - -
Accr3g02297 470 MobiDBLite consensus disorder prediction 55 69 - -
Accr3g02297 470 SUPERFAMILY RING/U-box 241 296 - -
Accr3g02297 470 MobiDBLite consensus disorder prediction 1 22 - -
Accr3g02297 470 MobiDBLite consensus disorder prediction 55 74 - -
Accr3g02297 470 SMART ringv_2 244 293 IPR011016 GO:0008270
Accr3g02297 470 PANTHER OS02G0165000 PROTEIN 29 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02297 Accr-Chr3 44314132 44320564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02297 228 299 C3H Transcription Factor Family AT2G37950 47.945 1.32e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02297 - - gmx:100798208 550.436