Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02296 ATGGAAAAAGCTTGTACTGATGCAGATGCTGGAGTTCGAAGTGATGGAGATTCCTTGTCAGATCCTGCTTATTATCATCGTCTACAGTCCAGGCGACCAAACCTCACCTCTTTGCAGATACCAGTAGGGTCAGTGGAAAGTGTATTATCCTCTTCTGCAAAGACAGATGTTGTATTACAGCCAAGTCCAGGTTCCTCTCGAGGACTGCCTCCAAGATCAAATTTAGCAAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGTCTTAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATACCCTCATCAGATGGAGCTTTGGACAAGCCTTCAACCTCACGGTCCCTTTCTTTAAATAAGGTTTTGTTTCCTTCATCAGCAAAAGCATCAAATTCACTACCAGTTACACCAATTGCAAATACAGTTGCAGAGACTGTGCATGGAAGTCATCTAGGAAGTGATCCTGACTTAAGTAAAATGGAAGTCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATATCAAATCCTCTAGTTTAAAGCGAACAGGTTCTAGTGGTTTGATCCGAGTAATTTCAGCAAGACGACATCCTGCAGCTGTTAATGACTATTCAATTGATAAAACTTCAGTGCCAGAGATTGCCATTGAAGATGCTACTGAGGACATTCCTGAAAAAGAAGCAGTCTGTAGGATTTGTTTAATGGAGCTGGGGGAAGGTGGGGATACCCTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCACTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGCATAAAAGGAAACAAGACATGTGATGTTTGCAACCAGGAAGTCCGAAACCTTCCAGTGACTCTATTGAAAATCCAAAGTCCTCATCCTACTGCTGAACGGTCATCAAATACACCACAGCAGATAGAAGTTTCTTTTCACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCTCTTGCCATCTCTCTACCTTTTGCCTGCACGTTTGGCCTTGTTGCTTCTTTGCTTGCTTCGACCATGGTGAGCAGAGATTACATGTGGGCTTATGCGTGCTTCCAGTTTGCAATTGTCATCCTTCTGGCTCATGTATTTTACACAATACGTAAATTAAATGGTGTTCTGTCGGTTATGCTTTCTTCACTTGCTGGATTTGCGATAGCAATGGCCGTAAATTATCTGCTCAAGGTATTTTTAAATTGGAGATTTAGAAGGCAGATACAATCTATTAATCAGACCCTAACAGAGCAGGGACAAGGACAGCATAATAGGCGTCAAAGACAGTAG 1401 0.4233 MEKACTDADAGVRSDGDSLSDPAYYHRLQSRRPNLTSLQIPVGSVESVLSSSAKTDVVLQPSPGSSRGLPPRSNLARVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGALDKPSTSRSLSLNKVLFPSSAKASNSLPVTPIANTVAETVHGSHLGSDPDLSKMEVKHHMTRSFSVPVNIKSSSLKRTGSSGLIRVISARRHPAAVNDYSIDKTSVPEIAIEDATEDIPEKEAVCRICLMELGEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCNQEVRNLPVTLLKIQSPHPTAERSSNTPQQIEVSFHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAISLPFACTFGLVASLLASTMVSRDYMWAYACFQFAIVILLAHVFYTIRKLNGVLSVMLSSLAGFAIAMAVNYLLKVFLNWRFRRQIQSINQTLTEQGQGQHNRRQRQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02296 466 MobiDBLite consensus disorder prediction 53 69 - -
Accr3g02296 466 SUPERFAMILY RING/U-box 237 292 - -
Accr3g02296 466 CDD RING_CH-C4HC3_MARCH 241 289 - -
Accr3g02296 466 SMART ringv_2 240 289 IPR011016 GO:0008270
Accr3g02296 466 MobiDBLite consensus disorder prediction 53 74 - -
Accr3g02296 466 MobiDBLite consensus disorder prediction 1 22 - -
Accr3g02296 466 PANTHER OS02G0165000 PROTEIN 29 455 - -
Accr3g02296 466 ProSiteProfiles Zinc finger RING-CH-type profile. 233 295 IPR011016 GO:0008270
Accr3g02296 466 Pfam RING-variant domain 241 288 IPR011016 GO:0008270
Accr3g02296 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 296 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02296 Accr-Chr3 44314132 44320564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02296 224 295 C3H Transcription Factor Family AT2G37950 47.945 1.49e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02296 - - gmx:100798208 555.829