Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02236 ATGGAGTTCGTGGGCAAAACTGTTAAGAAGGAGGTCACGGGGGTTGGGATTATCTCGGGAACAGTGAAATCTTTCGATTCATCTTCTGGGTTCGTTGAGATCGTTTACGAAGATGGTAATTATGAGGAGCTTGAATCGTCTGACGTGGCTTCTCTTGTTCAAGGTGAACCAGAGCTTGTAAAGGTGATGAAGCCCAGGGGAAGAAAGCCCAAGAAGAGGCGTCGTGTAGAAGAGAAGCATGACACCAGTGAAAGCCCAGGTAATATTGCTGAGAATTTGGGTGTTTCTGTGCTAAATGATTCTGATTTTGGGGGGGTTTCGGATGAAGGTGTTTCTTCTAGTGGGAATTTAAAAGTAAATGGTGAATTAGATAGTGGGTTGAAGGTAAGCCCGGGTATGGCAAATGGGGCGGGGGGAAATTTAACTTTGGATAATGAAATCATGGGGAATTTGAATTGGAGTGCCAACTCTAACTGGATCAGAGAAGTTCAACGGACGGAAAGCGGGCATGAAGAGAAATCCAAAGAAAGTATATCTACTAATGGTAATTCCAGCATAACGGATTGTGTTAAATATGGGCTTGATTTGAATGCTAGACTTAACCTGAACGAGGCTTCGGATCTGAATGATGGGTGTAGTTCCCATGCTAATACTGAGGATGATTTGAAGAAAAGGGGTTGCATTGATTTAAATATGGATGTGAATCATGAAATTGATTCCAGCGGGAACTTGAGTAATTTAGGTTGTCCAGCAGCTGAAATGTTGAAGCGGGAATGTAATTTTGATTTGAATGTTGAGGTATGTGATGAAGCTAAGGAAAATCAGGTTGATAGTGCTGGAGACAAACTGTCAGATGGAGGTGATTCGTCCGGTAAAATGGGGCAAAGCCGTAAGTCAGAGACAAATATCAATCAAAATTCAGTACAAGATGATACTGTGAAAAAGAGTTTGGATATCACTGATTCGGTCAAATTGGAGGGAATGGATAGTTTCCATGGGTGTTCAGGTCAAGACGCTTCTGTAAGTTTGATTGAGGAAAAGGAAGATGGAATTTACAATGGAGGTACTGTGGCTCTTGACTCTCTTGGGGTTTCAAATGCTATTTCTAGTAGGGATTGTGATTCTGCGGAGTTTTGGCAGGAGCATAAGCCTTCTGAAGCTGGTATTGCTATAACTCATGAATGTCAAAATGAGCCTGGAAGCCAATCTAAACAAGGAAGTGGCCGAAGAAAGAGAAGAAAGCTATCAGATAATCTGAAATCTGCTCCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGTGCATCAGCTCTAAAACGTGATTCAAGCCCTATAACAGTGAATGCGATGGATGATCCTTTGATGTCTCCAGGTCCCAGTGCCATAACAGAAGAAAAAACAGTTGTTTCTGGTTCCGAGCAGTATGAACAGTGCAGTGAACTTCCTCCAAAGCTGCAACTACCCCCTTCTTCTCAAAATTTGAACTTAGATGACATTCCTGTTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTACACTATTTTTAAGTCCTTTTGAGCTGGAGGATTTTGTAACTGCGCTGAAGAGTGTAAATCCTAACATATTATTTGACAGCATTCATTTTTCTATTTTACAAACTCTTAGAAAGCACTTGGACTACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCTTGAGAAATTTGAACTGGGATTTGTTGGACCTTGTCACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGATTTCAAACTGGTTTTGATCTTAAGTACTTGATGTTTGGTGGTGACTACTACAAGCAGCCTGTAACTTTGAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCCATAAGGTTGGAGCTTAGCAGAAGATGTTTGGTGACTGAGGCTGATATGAGTTTGGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGATCTCTAATGGACATTTCTGGCAGCTTTTCCATGTCTGAGGAGATTGTTGATGCCACAAATGACTGGAACAGCGATGAATGCTGCCTTTGCAGGATGGATGGAAATTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTAGGGGTTGCAAGTGACCATTTACCCGAAGGTGACTGGTATTGCCCTGAGTGTGCATTTGGCAGACGTAACCCTTGGATGAAACCACAAAAATCACTTCGAGGAGCAGACCTTTTAGCAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGCGGTTACCTATTAGTGTCAGATTCATCTGACATGAGATCCTTGTTCAATTACTACCATATAAATGATCTGCATGTTGTAATTGAAGCGTTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCACTGGGATATTCCTTTTAACTTCATCTCAAATCAAAGTGCTAGCAGGAGCATGTATATGAAGACAGAATACTCTGCTACATATCCATCCTCAGCACCTTTTTCTTCCTCAGAAGCATTCTTGGACAAGAATCAGGCTGCTGATCAAAGAAAGTATGATGAAACTTCTACTTTGCAACCTGTTGGCCAAGAGTTTCTCAAAGGTGAGGCACAATTAGATCCAGTGATAATGACAGAAAGTCCCTGTGTTGCTTCAGAGGTATCAGCTGATACCACAAAAATGAGGTCAACCACTGATGAAGATCCTCTAATTCCTGGACTCCATGATTCCAGAAGATCTGATGGGGCCCTGAATCAGCCAGGAATACCAGAGAAATTGCACCCAGTCAATCACTCTGTTTTGAGGTCTTCCCGCTTACATACAAGCCACAAGGGAAACTTAACATCTGCAGGTATTGGTAATACTGCATCAGCTATGTCCACTGGGAATACGGCTGCTTCAGAAATGCCATGTCGAAATGAATACATAAACTATTACAGCTTTGCTCGAACAGCTTCATTAGTGGCAGAGGAGTTGATACGTAAATCCCCTGAAAAGGTCAACAAGAGTATTGAAATGTCTGAAGAAGACTTAATTTCAGAACAAGCAAAGACTATTATTAAAAAATCTAGGAACTTCTACTGGCCAAGTTCTCAAAATATTAATGCAGCTGCCAAAAAGGAAAAATGTGGGTGGTGCTTTATGTGCAAAGTTGAAAATGATGACAGAGATTGCTTGTTTAACACTGTGGTGATGCCGGTTCAGGAAGTTTCTAGAAGTGATTTAGTTGGGTTTCAGCCAAAGAACCAGAATGCTCATCTTAGAGATGTCATATTTTATATTCTCTCCCTCGAGGATCGATTACGTGGGCTTCTACTGGGGCCTTGGTTGAGCGTCCATCATTCTAAGAATTGGCGTAACAATCTTCTCAAGGCATCTGATGTTGCATCTATTAAATGCTCATTATTGACTTTAGAGTCCAATCTGCGGCCTCTTGCTCTTTTGGCAGACTGGTGGAAACATGTGGATTCTGCTGTTACCATGGGTTCGGCCTGTCATATTGTGGCCAGTTCACGGACATCTTGGAGGCATAGTATTGGAAGAAAAAGGGCAAGGTGCTCTGATATTGAGTCCAGTGCATCTTCTAATGCAAGTGGTCTGGGATCATATTGGTGGAGAGGGGGTTGGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTGCCCCACTCTTTGGTTACCAAGGCTGCCAGAGAAGCTGGGTGTACAAAGATACTGGGCATTCTATATCTTGAGAATTCTGATTTTTCAAAGAGAAGCAAATGTGTTGCCTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCTGTCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCAATGCGTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTTCGCAGGAAGAGCACTGAAAAGGAATGTGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCAGATATTGTCAAGAAACATGGTTCGTTGTTGGAAGAATCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATTTTATAAAGAATTTTGAGGACAAAAGAATTGCTCGCAAGTCCAATGAAATGAAACCAGGAAAAGTTCTGGAGAATAGTGGATTTAACAAGAGATCTACCCAAAAACGGGGTTTTTCATATTTGTTTTCTAGGATGGAAAAGCCTACCTGTCATCAGTGTGGCCACTGCAACAAAGATGTTCCAACCAGGGAAGCTGTGAGCTGCCAGTACTGTAATGGATTGTTTCATAAGAGGCATGCCAGAAAATCCGGTGGCACTGCTGAATGCACATATTCATGTCATAGATGCCTGGATGGGATGCGTGTGAATTCTAATTCAAAAAGAAGAAAACTTGACCCAAAACTAGGGAATATTCAGTCACAAAAGGGTCAAAAGGCTCCATCAGTGGGTAGAGGTAGACCAGCTAAGCAAAAAGGCGGTAAAAAGCCATTGAGTAAGAGACGGAAAGGTAAATCTCAAACCAATAAAACGCTCCCACCGAGTATACCTCTTCGTCGTTCTGCCAGGAAGGCCAAATGCTTGTATGTGCAAAAGAAAAGGAATGTAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGGTAACACTAAGGAAGCCCAAGGAAACTACTTCTCGTTCTAAGGAAACTGTAACTTTTGAGCGTAAGAAAAGAACTCAAGTCTGTAATAGCTACTGGCTTAATGGTCTTAAGCTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGTATCTTGCCCACTCAAAAGGTTCTTCTGGCACCGTTGATCCACCTAAATGTCATCTCTGTTGTGGAGATAGGGGCACTTTGGATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTCGGACTCACTCTAGAGAATGTCAGACAACTTATTGGATTTAGGTGTCATGTTTGTCGTGATAGGTTTGCGCCAATTTGTCCCCACAAGAACAGTAATGCCTTGACTCATGCTGAAACCAAAGCTGCAACTGGGTGTGCTGAGGAACTACCTAATTCTGTTTCACTTCAGCCATTGAGTCAGGTTTGA 5202 0.417 MEFVGKTVKKEVTGVGIISGTVKSFDSSSGFVEIVYEDGNYEELESSDVASLVQGEPELVKVMKPRGRKPKKRRRVEEKHDTSESPGNIAENLGVSVLNDSDFGGVSDEGVSSSGNLKVNGELDSGLKVSPGMANGAGGNLTLDNEIMGNLNWSANSNWIREVQRTESGHEEKSKESISTNGNSSITDCVKYGLDLNARLNLNEASDLNDGCSSHANTEDDLKKRGCIDLNMDVNHEIDSSGNLSNLGCPAAEMLKRECNFDLNVEVCDEAKENQVDSAGDKLSDGGDSSGKMGQSRKSETNINQNSVQDDTVKKSLDITDSVKLEGMDSFHGCSGQDASVSLIEEKEDGIYNGGTVALDSLGVSNAISSRDCDSAEFWQEHKPSEAGIAITHECQNEPGSQSKQGSGRRKRRKLSDNLKSAPETVLRRSSRRASALKRDSSPITVNAMDDPLMSPGPSAITEEKTVVSGSEQYEQCSELPPKLQLPPSSQNLNLDDIPVLDLFSIYACLRSFSTTLFLSPFELEDFVTALKSVNPNILFDSIHFSILQTLRKHLDYLSNEGCQSASDCLRNLNWDLLDLVTWPIFMAEYLLIHGSGFQTGFDLKYLMFGGDYYKQPVTLKIEILQCLCDDMMEVEAIRLELSRRCLVTEADMSLDQSMYFDICKKRRSLMDISGSFSMSEEIVDATNDWNSDECCLCRMDGNLICCDGCPAAFHSKCVGVASDHLPEGDWYCPECAFGRRNPWMKPQKSLRGADLLAIDPHGRLYFDSCGYLLVSDSSDMRSLFNYYHINDLHVVIEALKAADAFYGSILMAICKHWDIPFNFISNQSASRSMYMKTEYSATYPSSAPFSSSEAFLDKNQAADQRKYDETSTLQPVGQEFLKGEAQLDPVIMTESPCVASEVSADTTKMRSTTDEDPLIPGLHDSRRSDGALNQPGIPEKLHPVNHSVLRSSRLHTSHKGNLTSAGIGNTASAMSTGNTAASEMPCRNEYINYYSFARTASLVAEELIRKSPEKVNKSIEMSEEDLISEQAKTIIKKSRNFYWPSSQNINAAAKKEKCGWCFMCKVENDDRDCLFNTVVMPVQEVSRSDLVGFQPKNQNAHLRDVIFYILSLEDRLRGLLLGPWLSVHHSKNWRNNLLKASDVASIKCSLLTLESNLRPLALLADWWKHVDSAVTMGSACHIVASSRTSWRHSIGRKRARCSDIESSASSNASGLGSYWWRGGWLSRHLFNWKVLPHSLVTKAAREAGCTKILGILYLENSDFSKRSKCVAWRAAVETSISVEQLAVQVRELDSNIRWHDIENTHPQCVLDKESRKSIRLFKKVIVRRKSTEKECVKYLLDFGKRRAIPDIVKKHGSLLEESSSDRKKYWLEEPYVPLHFIKNFEDKRIARKSNEMKPGKVLENSGFNKRSTQKRGFSYLFSRMEKPTCHQCGHCNKDVPTREAVSCQYCNGLFHKRHARKSGGTAECTYSCHRCLDGMRVNSNSKRRKLDPKLGNIQSQKGQKAPSVGRGRPAKQKGGKKPLSKRRKGKSQTNKTLPPSIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKVTLRKPKETTSRSKETVTFERKKRTQVCNSYWLNGLKLSTKPNDERVMLFKEKKYLAHSKGSSGTVDPPKCHLCCGDRGTLDYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCRDRFAPICPHKNSNALTHAETKAATGCAEELPNSVSLQPLSQV 1733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02236 1733 ProSitePatterns Zinc finger PHD-type signature. 695 736 IPR019786 -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 902 943 - -
Accr3g02236 1733 CDD PHD1_AIRE 694 736 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 275 314 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 1551 1576 - -
Accr3g02236 1733 PANTHER PHD FINGER FAMILY PROTEIN 2 1696 - -
Accr3g02236 1733 Pfam PHD-finger 695 737 IPR019787 -
Accr3g02236 1733 SUPERFAMILY FYVE/PHD zinc finger 1643 1696 IPR011011 -
Accr3g02236 1733 SMART PHD_3 1644 1691 IPR001965 -
Accr3g02236 1733 SMART PHD_3 694 737 IPR001965 -
Accr3g02236 1733 SUPERFAMILY FYVE/PHD zinc finger 666 738 IPR011011 -
Accr3g02236 1733 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 611 639 IPR028942 -
Accr3g02236 1733 ProSiteProfiles Zinc finger PHD-type profile. 692 739 IPR019787 -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 1484 1590 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 393 456 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 289 313 - -
Accr3g02236 1733 ProSiteProfiles DDT domain profile. 497 557 IPR018501 -
Accr3g02236 1733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1638 1697 IPR013083 -
Accr3g02236 1733 SMART testlast3 497 557 IPR018501 -
Accr3g02236 1733 Pfam DDT domain 500 553 IPR018501 -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 65 90 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 1515 1533 - -
Accr3g02236 1733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 752 IPR013083 -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 956 980 - -
Accr3g02236 1733 MobiDBLite consensus disorder prediction 909 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02236 Accr-Chr3 42151779 42167159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02236 1 1703 PHD Transcription Factor Family AT5G12400 40.482 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Accr3g02236 DDT 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02236 - - gmx:100800973 1927.91