Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02205 ATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCTAGATCGTGAAAATTGGCGTGATGGACGCAACACTGAACATTCTGCTATTAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGATTTGTTGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTTGTTTATGAGTATGAATTGAAAATTGGGTGGGGTAAATCTGTTGCTCTCCCATCGCAAGCGCTGCCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCTACTGTGATCTTGTCTGGTCCGTCTGGTCCATCAGGTCCACCAGTAAGTTCTGTTCCGAATCAGAACTCTGAACTGGTTCTTACTCCTAATATTCCCGATATAATGGTCATACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTGTACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGTACAGAACCCTTCATTATGATAACCGGTAGTGGAAGATGGATTCCTCCATCATTGCCTTCTGCAAGAAGTCCAGAACATGAAAAGGAGTTGGGTTCCACACATGCTGCCGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTGACCGATGCACAAAGGGACGAATTTGAGGATATGCTGCGTGCTTTAACGTTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTCAAAGAGACCCCTATTCCAACTAAAGTTGCTAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCAGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGAAGCATAACAGGACGCATTACTGCTGAGGCCCTTAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACGTTTATTCGTTCTGGCAACTCTGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGCCGAGGAGCGGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGGCACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAGCTAGACAATGAATTGAAACATGCTCAGAACCAAGCAAGTTCTGGGAGATATTCAAGTAGTCGGAGAGAAACAAGCATTGAGCCTGAACCAGTAGGTTTCTCTGGATGGAACCATTTTGACGAGGATGATTCACACTCACAAGGCAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATTCCACACCCTGAATTGAAAGCCTTCACAAAAAAAGAAAAGAATGATCCAGTTTTACCAGCTTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAACAGAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCGTCTTCTGGTAGTGAGAATGTTGGTGATGATACTGTTAAGGCAGATGAGCTGGAGTCTGCTGCTGATACAAGCATTTCTGCACCAACTGATAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAACGGGGAATAAAAAATTTGGAGGAAATTGAGAGGAAAGTCACACTGCACAGGAAACGGCTGCAGGCAGAGTTTGGATTATCAGATTCAGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCAGAGCGGAGGGACAGGCGAGACGATTCACATGCTGTCTCAAGAAAACGCCATCATAGTCGTAGTGAAAGTCATAGTCCACCACGAAGATCATCTGGCAGAGACAGGGAGAAGGAACATGATGCAGACAGGGACCGAGAGAAAAGTGGAAGCAGAGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGATCGAAGGAGACGGGTGAAATAA 2499 0.4478 MEELKHEQEMRERRNLDRENWRDGRNTEHSAISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVSSVPNQNSELVLTPNIPDIMVIPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSARSPEHEKELGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSGNSGVTLFHSICGDAPEIEKNIHSEDTVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDNELKHAQNQASSGRYSSSRRETSIEPEPVGFSGWNHFDEDDSHSQGKGSVSLAQTLPIPHPELKAFTKKEKNDPVLPASKWAREDDESDDEQKGRGKGLGLSYSSSGSENVGDDTVKADELESAADTSISAPTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDRRDDSHAVSRKRHHSRSESHSPPRRSSGRDREKEHDADRDREKSGSRERDDHERERGRDRDRRRRVK 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02205 832 SMART cwf21_2 696 745 IPR013170 -
Accr3g02205 832 Gene3D Surp module 198 267 IPR035967 GO:0003723|GO:0006396
Accr3g02205 832 Pfam Surp module 210 262 IPR000061 GO:0003723|GO:0006396
Accr3g02205 832 MobiDBLite consensus disorder prediction 560 608 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 288 318 - -
Accr3g02205 832 Pfam CID domain 327 455 IPR006569 -
Accr3g02205 832 MobiDBLite consensus disorder prediction 294 318 - -
Accr3g02205 832 CDD RRM_SR140 59 142 IPR035009 -
Accr3g02205 832 SMART 558neu5 327 462 IPR006569 -
Accr3g02205 832 MobiDBLite consensus disorder prediction 785 825 - -
Accr3g02205 832 Coils Coil 697 717 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 563 582 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 622 655 - -
Accr3g02205 832 ProSiteProfiles CID domain profile. 320 465 IPR006569 -
Accr3g02205 832 Coils Coil 723 743 - -
Accr3g02205 832 ProSiteProfiles SAP motif profile. 514 548 IPR003034 -
Accr3g02205 832 SUPERFAMILY ENTH/VHS domain 324 464 IPR008942 -
Accr3g02205 832 Gene3D - 320 467 IPR008942 -
Accr3g02205 832 MobiDBLite consensus disorder prediction 755 776 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 1 43 - -
Accr3g02205 832 SMART surpneu2 210 264 IPR000061 GO:0003723|GO:0006396
Accr3g02205 832 MobiDBLite consensus disorder prediction 621 701 - -
Accr3g02205 832 PANTHER RNA PROCESSING PROTEIN LD23810P 1 784 - -
Accr3g02205 832 Coils Coil 325 345 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 741 832 - -
Accr3g02205 832 MobiDBLite consensus disorder prediction 1 57 - -
Accr3g02205 832 Gene3D - 696 747 - -
Accr3g02205 832 CDD cwf21_RRC1-like 696 745 IPR047491 -
Accr3g02205 832 ProSiteProfiles SURP motif repeat profile. 212 255 IPR000061 GO:0003723|GO:0006396
Accr3g02205 832 Gene3D - 1 143 IPR012677 -
Accr3g02205 832 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 134 IPR000504 GO:0003723
Accr3g02205 832 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 141 IPR000504 GO:0003723
Accr3g02205 832 SUPERFAMILY Surp module (SWAP domain) 186 267 IPR035967 GO:0003723|GO:0006396
Accr3g02205 832 SUPERFAMILY RNA-binding domain, RBD 53 148 IPR035979 GO:0003676
Accr3g02205 832 SMART rrm1_1 61 137 IPR000504 GO:0003723
Accr3g02205 832 Pfam cwf21 domain 697 743 IPR013170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02205 Accr-Chr3 40381895 40388366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02205 57 137 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.09e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02205 K12842 - gmx:100776093 1330.85