Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr3g02204 | ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCGGAAGATGAAACTGCACGGTTATATGCTGAATTTGTTGAGTCATTTCAAGGTGATATCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCAAATGAGAAAGTAAAAGCAGATACTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAAAGAATCTGAGAAGAAAAAAGAGGAGGAGAAGCCCAAGGAGAAGGATAAAGGTAAGTCTCGTAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCTAGATCGTGAAAATTGGCGTGATGGACGCAACACTGAACATTCTGCTATTAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGATTTGTTGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTTGTTTATGAGTATGAATTGAAAATTGGGTGGGGTAAATCTGTTGCTCTCCCATCGCAAGCGCTGCCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCTACTGTGATCTTGTCTGGTCCGTCTGGTCCATCAGGTCCACCAGTAAGTTCTGTTCCGAATCAGAACTCTGAACTGGTTCTTACTCCTAATATTCCCGATATAATGGTCATACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTGTACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGTACAGAACCCTTCATTATGATAACCGGTAGTGGAAGATGGATTCCTCCATCATTGCCTTCTGCAAGAAGTCCAGAACATGAAAAGGAGTTGGGTTCCACACATGCTGCCGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTGACCGATGCACAAAGGGACGAATTTGAGGATATGCTGCGTGCTTTAACGTTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTCAAAGAGACCCCTATTCCAACTAAAGTTGCTAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCAGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGAAGCATAACAGGACGCATTACTGCTGAGGCCCTTAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACGTTTATTCGTTCTGGCAACTCTGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGCCGAGGAGCGGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGGCACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAGCTAGACAATGAATTGAAACATGCTCAGAACCAAGCAAGTTCTGGGAGATATTCAAGTAGTCGGAGAGAAACAAGCATTGAGCCTGAACCAGTAGGTTTCTCTGGATGGAACCATTTTGACGAGGATGATTCACACTCACAAGGCAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATTCCACACCCTGAATTGAAAGCCTTCACAAAAAAAGAAAAGAATGATCCAGTTTTACCAGCTTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAACAGAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCGTCTTCTGGTAGTGAGAATGTTGGTGATGATACTGTTAAGGCAGATGAGCTGGAGTCTGCTGCTGATACAAGCATTTCTGCACCAACTGATAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAACGGGGAATAAAAAATTTGGAGGAAATTGAGAGGAAAGTCACACTGCACAGGAAACGGCTGCAGGCAGAGTTTGGATTATCAGATTCAGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCAGAGCGGAGGGACAGGCGAGACGATTCACATGCTGTCTCAAGAAAACGCCATCATAGTCGTAGTGAAAGTCATAGTCCACCACGAAGATCATCTGGCAGAGACAGGGAGAAGGAACATGATGCAGACAGGGACCGAGAGAAAAGTGGAAGCAGAGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGATCGAAGGAGACGGGTGAAATAA | 2877 | 0.4418 | MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDITPGSKAFVRGGTINPNEKVKADTEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKDKGKSRNIDNFMEELKHEQEMRERRNLDRENWRDGRNTEHSAISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVSSVPNQNSELVLTPNIPDIMVIPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSARSPEHEKELGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSGNSGVTLFHSICGDAPEIEKNIHSEDTVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDNELKHAQNQASSGRYSSSRRETSIEPEPVGFSGWNHFDEDDSHSQGKGSVSLAQTLPIPHPELKAFTKKEKNDPVLPASKWAREDDESDDEQKGRGKGLGLSYSSSGSENVGDDTVKADELESAADTSISAPTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDRRDDSHAVSRKRHHSRSESHSPPRRSSGRDREKEHDADRDREKSGSRERDDHERERGRDRDRRRRVK | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 867 | 958 | - | - | |
| Accr3g02204 | 958 | Pfam | CID domain | 453 | 581 | IPR006569 | - | |
| Accr3g02204 | 958 | Coils | Coil | 849 | 869 | - | - | |
| Accr3g02204 | 958 | SMART | 558neu5 | 453 | 588 | IPR006569 | - | |
| Accr3g02204 | 958 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 267 | IPR000504 | GO:0003723 | |
| Accr3g02204 | 958 | SMART | cwf21_2 | 822 | 871 | IPR013170 | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Accr3g02204 | 958 | SUPERFAMILY | Surp module (SWAP domain) | 312 | 393 | IPR035967 | GO:0003723|GO:0006396 | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 881 | 902 | - | - | |
| Accr3g02204 | 958 | CDD | RRM_SR140 | 185 | 268 | IPR035009 | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 747 | 827 | - | - | |
| Accr3g02204 | 958 | Gene3D | - | 97 | 269 | IPR012677 | - | |
| Accr3g02204 | 958 | ProSiteProfiles | SURP motif repeat profile. | 338 | 381 | IPR000061 | GO:0003723|GO:0006396 | |
| Accr3g02204 | 958 | Gene3D | - | 822 | 873 | - | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
| Accr3g02204 | 958 | Coils | Coil | 451 | 471 | - | - | |
| Accr3g02204 | 958 | SMART | surpneu2 | 336 | 390 | IPR000061 | GO:0003723|GO:0006396 | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 748 | 781 | - | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 689 | 708 | - | - | |
| Accr3g02204 | 958 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 274 | IPR035979 | GO:0003676 | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 420 | 444 | - | - | |
| Accr3g02204 | 958 | Coils | Coil | 17 | 37 | - | - | |
| Accr3g02204 | 958 | SMART | rrm1_1 | 187 | 263 | IPR000504 | GO:0003723 | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 414 | 444 | - | - | |
| Accr3g02204 | 958 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 188 | 260 | IPR000504 | GO:0003723 | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 686 | 734 | - | - | |
| Accr3g02204 | 958 | Gene3D | - | 446 | 593 | IPR008942 | - | |
| Accr3g02204 | 958 | CDD | cwf21_RRC1-like | 822 | 871 | IPR047491 | - | |
| Accr3g02204 | 958 | Pfam | Surp module | 336 | 388 | IPR000061 | GO:0003723|GO:0006396 | |
| Accr3g02204 | 958 | Coils | Coil | 823 | 843 | - | - | |
| Accr3g02204 | 958 | ProSiteProfiles | CID domain profile. | 446 | 591 | IPR006569 | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 65 | 80 | - | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 99 | 125 | - | - | |
| Accr3g02204 | 958 | SUPERFAMILY | ENTH/VHS domain | 450 | 590 | IPR008942 | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 911 | 951 | - | - | |
| Accr3g02204 | 958 | MobiDBLite | consensus disorder prediction | 46 | 125 | - | - | |
| Accr3g02204 | 958 | Gene3D | Surp module | 324 | 393 | IPR035967 | GO:0003723|GO:0006396 | |
| Accr3g02204 | 958 | ProSiteProfiles | SAP motif profile. | 640 | 674 | IPR003034 | - | |
| Accr3g02204 | 958 | PANTHER | RNA PROCESSING PROTEIN LD23810P | 1 | 910 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr3g02204 | Accr-Chr3 | 40378177 | 40388366 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr3g02204 | 183 | 263 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.099 | 3.31e-06 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr3g02204 | K12842 | - | gmx:100776093 | 1530.77 |