Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02196 ATGCCTTCCCTTCCTGTCTCTGATGTTGCTCATTCCGAGACTCCGAAAGAAAAGAAGGAGAAGAAGAAGAAGAAGCAGATGAAGAACGAGGCCGTACTTGAAGATGGGGTTTCGGCAAAGAGGAAGAAGAAGGAAAGCAAGAAACGTAAAGCTCTGGATGTTGAGACGATGGGGCGTGAGGATGAGGAAAAGAGTGAGACGAGTTTCGAGTTGTTCGAGTCTGATAGTGTGAAAGAGAAGAGGAAGAAGAAAAAGACTAAGGTGGATGAACCTGAAGATAAAGAGGAAGAGGTTGAGAAGGAGAACCTTAATGCTATTTTAAACTTTAGGATATCGGCGCCGTTGAGGGCGAAGTTGAAAGAGAAGGGGATCGAATCGTTATTTCCTATTCAGGCCATGACTTTTGATACCGTCCTAGATGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCAATATTAGAGTCTTTAACAAATGGTCCTGCAAAAGCAGCGCGAAAGTCTGGATATGGAAAGGCTCCATATGTTCTTGTGCTCTTACCTACCAGAGAATTGGCTAAACAGGTGTTTTCTGATTTTGAACTTTATGGTGGAGCACTGGGATTGACATCTTGTTGTGTATATGGTGGAGCTCCATATCAAGCACAAGAATTTAAACTCAAGAAGGGCGTTGATGTTGTTGTTGGAACTCCAGGACGCATAAAAGATCACATAGAGAGGAACAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGGCTGGGTCAAGATTATTTCTATGAAATTTCTGAAATCTAATAAAAAGACTGCTGATCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCGTGTTCTAGTACTGCTAGGTCCCAACTTATTCCAGACGTTATACGTTGCTATTGCAATGGAGGTCGGACAATCATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTAGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTCACCTTGGCTGGTTTCAGGACTGGCAAGTTTACAACATTAGTGGCCACTAATGTGGCGGCGCGTGGTTTGGACATTAATGATGTTCAGTTAATCATCTAG 1284 0.4393 MPSLPVSDVAHSETPKEKKEKKKKKQMKNEAVLEDGVSAKRKKKESKKRKALDVETMGREDEEKSETSFELFESDSVKEKRKKKKTKVDEPEDKEEEVEKENLNAILNFRISAPLRAKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGKAPYVLVLLPTRELAKQVFSDFELYGGALGLTSCCVYGGAPYQAQEFKLKKGVDVVVGTPGRIKDHIERNNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKIISMKFLKSNKKTADLVGNEKMKASTNVRHIVLPCSSTARSQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRTGKFTTLVATNVAARGLDINDVQLII 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02196 427 MobiDBLite consensus disorder prediction 1 74 - -
Accr3g02196 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 312 IPR027417 -
Accr3g02196 427 MobiDBLite consensus disorder prediction 11 41 - -
Accr3g02196 427 Pfam Helicase conserved C-terminal domain 357 427 IPR001650 -
Accr3g02196 427 SMART ultradead3 123 335 IPR014001 -
Accr3g02196 427 CDD SF2_C_DEAD 332 427 - -
Accr3g02196 427 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Accr3g02196 427 CDD DEADc 115 312 - -
Accr3g02196 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 427 IPR027417 -
Accr3g02196 427 Pfam DEAD/DEAH box helicase 128 303 IPR011545 GO:0003676|GO:0005524
Accr3g02196 427 Gene3D - 49 316 IPR027417 -
Accr3g02196 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 427 IPR001650 -
Accr3g02196 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 317 IPR014001 -
Accr3g02196 427 MobiDBLite consensus disorder prediction 48 74 - -
Accr3g02196 427 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 79 427 - -
Accr3g02196 427 Gene3D - 317 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02196 Accr-Chr3 40156099 40157382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02196 141 427 Eukaryotic Initiation Factors Gene Family AT1G72730 31.615 4.44e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02196 K16911 - mnt:21396147 594.734