LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g02181	ATGAAGTGGGAAATGGATATTCTCTCACAATCATCATCATCATCATCTTCACATATCTCCAATAATCGCACTTGGCTAATTCAAGACGCCATGAACACAAGAACAACAAAATGGACACCATCAGAGAACAAAATGTTCGAGAATGCTCTCGCTGTGTACGATAAAGACACACCAGATCGGTGGGTGAAAGTTGCAGCAATGATTCCAGGGAAGACAGTAGGAGATGTGATTAAGCAGTACAGAGAATTAGAAGAAGATGTTAGTAACATAGAAGCTGGATTGGTTCCAATTCCAGGTTATTATAGTAGTAGTAGTGGCACCGCCGCCGCCGCCAGGACGACGACTTCGCATCATCAATTCACCTTAGATTGGGTTAATTCTTCTGGATTTGATGGCTTCAAATCACAAGGTGGAAAGAGATCCTCATCATCTTCAGCAGGAAGACCCCCTGAACAAGAAAGAAAGAAAGGTGTCCCATGGACAGAAGAAGAACACAAACTGTTTCTGCTGGGATTGAAGAAGTATGGGAAAGGTGATTGGAGGAACATATCGAGGAATTTCGTGGTGACTCGGACGCCGACTCAGGTGGCGAGCCACGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATTCATGATATAACAACAGTGAATCTGTCAGAAACCACAAGAACACCTTCTTTAGAAGACATCAAAAATGGAGGTAACTTGAAGCAGGAGGCGAATCCAAGTGCTTCTGCTGCTTTAGGTCAAGTTCATTATCAATGGAACCAGCAGGCAACAAATGCAGGAGCTATGGGATTTAATATTCCTTATGGGGTTAATAGTAACTCTTATGGGATAAAAGTGCAGGGCCAAAATCTGCATACAAGTGCCCTTCTGAATGATCATCTTGATTCTTCTTCTTACTTTGGATCACCTCAAACTCAGAACAATATGGTTTTCCAAATGCATAATTCTGCTTCTGCTCACCACTTTTCTCATGCTTGA	1014	0.426	MKWEMDILSQSSSSSSSHISNNRTWLIQDAMNTRTTKWTPSENKMFENALAVYDKDTPDRWVKVAAMIPGKTVGDVIKQYRELEEDVSNIEAGLVPIPGYYSSSSGTAAAARTTTSHHQFTLDWVNSSGFDGFKSQGGKRSSSSSAGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTPSLEDIKNGGNLKQEANPSASAALGQVHYQWNQQATNAGAMGFNIPYGVNSNSYGIKVQGQNLHTSALLNDHLDSSSYFGSPQTQNNMVFQMHNSASAHHFSHA	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g02181	337	SUPERFAMILY	Homeodomain-like	36	91	IPR009057	-
	Accr3g02181	337	CDD	SANT	37	83	IPR001005	-
	Accr3g02181	337	Gene3D	-	29	97	-	-
	Accr3g02181	337	ProSiteProfiles	Myb-like domain profile.	152	204	IPR001005	-
	Accr3g02181	337	Gene3D	-	158	208	-	-
	Accr3g02181	337	SMART	sant	34	86	IPR001005	-
	Accr3g02181	337	SMART	sant	156	206	IPR001005	-
	Accr3g02181	337	MobiDBLite	consensus disorder prediction	133	159	-	-
	Accr3g02181	337	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	155	207	IPR006447	GO:0003677
	Accr3g02181	337	ProSiteProfiles	SANT domain profile.	160	208	IPR017884	-
	Accr3g02181	337	CDD	SANT	159	204	IPR001005	-
	Accr3g02181	337	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	152	208	IPR017930	-
	Accr3g02181	337	Pfam	Myb-like DNA-binding domain	159	204	IPR001005	-
	Accr3g02181	337	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	34	310	IPR043363	-
	Accr3g02181	337	FunFam	Transcription factor SRM1	30	97	-	-
	Accr3g02181	337	FunFam	transcription factor MYB1R1	158	209	-	-
	Accr3g02181	337	SUPERFAMILY	Homeodomain-like	153	207	IPR009057	-
	Accr3g02181	337	MobiDBLite	consensus disorder prediction	133	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g02181	Accr-Chr3	39718701	39719874	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Accr3g02181		Myb_DNA-binding	1.7e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g02181	-		-	gmx:778181	352.058