Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02165 ATGAATCCTTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCTTCTCTGGGCATCAGCGACGAGGCTTCCTGGCACGCCAAGTACAAAGATTCCGCTTATGTATTCGTCGGCGGCATTCCCTTCGATCTAACGGAGGGTGATCTTCTAGCAGTTTTTGCTCAGTACGGGGAAGTTGTTGATGTAAATCTTGTTAGGGACAAAGGTACTGGGAAATCGAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAATTCTGGCTGTAGATAATTTGAATGGAGCACAGATTTTGGGTCGAGTCATTCGAGTTGATCACGTCACTAAATACAAAAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAGCGAGGTGTTTGCCGAGCTTTCCAGAGAGGTGAATGCACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAACACAGGTTGGGGGGCCCCTGAGGATGCTAGTTCAAAGTGGGGTCATGACAAATTTGAAGGTCACAAAAAAGAAAGAGATTTACATTCTGAAGCTAAAAAATCAAGAAGGAGAAGCGATGATGATATGGAACTCGAGCGAAGAGATGATCGTAGGAGGGAAGACACTAGGTCAAGGAAGCCAGATAAGGATGAGTTTGAACCCAGGACAAGAGATTCCGACCGAAGGGAAGAAAAGAGGCACAAGAGACAGTATGACGATGATGATTTTGGTAGTAGATCAAGGGAAGATCATATTAGCAGGGAAGAGAGGAGGTCAAGGCAAAGAGACTACGATTTTGCATCAAGGTCAACAGATGATTATGATAGGAAGCGAGGGGACAGATCAAACAGACATGATGATACAGATAGATCAAAGCCAAAAGAAAAATATGATTTGGGCAGGAGAGAAGAAAAGAGATCAAGAAGGTGA 951 0.4343 MNPLTLVKRIQNINSKEASLGISDEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAQILGRVIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDASSKWGHDKFEGHKKERDLHSEAKKSRRRSDDDMELERRDDRRREDTRSRKPDKDEFEPRTRDSDRREEKRHKRQYDDDDFGSRSREDHISREERRSRQRDYDFASRSTDDYDRKRGDRSNRHDDTDRSKPKEKYDLGRREEKRSRR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02165 316 MobiDBLite consensus disorder prediction 171 316 - -
Accr3g02165 316 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Accr3g02165 316 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Accr3g02165 316 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Accr3g02165 316 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Accr3g02165 316 SMART rrm1_1 37 110 IPR000504 GO:0003723
Accr3g02165 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Accr3g02165 316 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Accr3g02165 316 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 231 - -
Accr3g02165 316 Gene3D - 8 126 IPR012677 -
Accr3g02165 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Accr3g02165 316 Gene3D - 127 201 - -
Accr3g02165 316 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Accr3g02165 316 MobiDBLite consensus disorder prediction 161 316 - -
Accr3g02165 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02165 Accr-Chr3 39266687 39269060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02165 24 128 Eukaryotic Initiation Factors Gene Family AT3G16380 32.381 6.39e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g02165 3 39266687 39269060 Accr3g02165 3 39266687 39269060 ECH