Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02149 ATGGAAGATACATCTTCTTCTTCTTCTCCTCTTCTTCCAGTTTCAACTTCTCAGCTTCAACCAGAAGAAGCTGATAATTCAAATGAACAGAATCATCAACAACCACTTCGTAATTCTCTGTCATATAGGGCTAACATTTACATGGCCAATCCTCATCTTGCTGCTATTAGGGGTGATGTCTGCTCTTGCCTCATCATTCTCATAACATTTTGGTTGGTCGCAACAATAGGTCTGGTCGCTGGTATTTACGGCACAACAACTTTGCAATTAGGTCCTTACTCCTCAGTTTTAATACAACTCAACTCAATATTTGTACGGTCTATCAAGGTGGAACAAATTAATGAACCAAAACCTGGGATAATGCTATATGGATTTGATGAACCACCTGCCCTTGATGTCAAAACTAATTGGTCTAGGTCATATAATGGATTTGTGCCACACAATTTTTACAAGGAATGGATATTCTACCTCAACAGACAGTCTCAGTTAGATATCTTCTATGATGTCAAGTCCCCAAGATTCTCACAATTCTCTCTTGTTATTGCTCAAGGTAGAGAAGAGCTTCTTGGGTGGATAGAGGAGCCCTCATTTCCTAACACAACATTATCTTGGAATATTATTTATGGGAGAGACAAGATCACACAGAAAATATCAGATCCATTTTCTTATTATGTAGCACTTGGTAACTTGTACACTCAAGATGTGGAGGTGGAATTGAAGTTCAGTGTGAGTTCAGTTGTGTACAATACAAGCAGTGCAAGCAGCAGATGTTCACCAGATAGCAGTTTGTGTAGATTACAACTTTCTCTTTCACAGTCTGGCTCTGCAGTATTGACTACTCCACCTCCTCCACGGGGTAATTTTGAGGATGAATGGTATCATGTGAAACTGTCATATACACCAAGGTGGACCACTTACTTTGTCGCATCAGGAGTGGTGACTGGACTAATCTTCTTCATCTTCAGAATCTGCAATGGGTTCCAAAGATATGATTCAGAGACAGAAAGCTTGCAACAAGTTCATCATCATGTTGTTTCAGAACGAACACCGTTGCTGGTTAACAAAAACGACGACGCTTTGAGCTTGGGTTCGTCTTATGAGTCTTTTACTAGTGAGGAAGAAGATGTGACAGGGAAGCCATTAATGAAGGAAGGAGGAGAAGCTGAGAATAGTATGAAGCATTTGTGTGTGATTTGTTTTGATGCTTTAAGGGATTGCTTCTTTCTACCATGTGGCCATTCTGCAGCTTGCTTTCAATGTGCAACCAGGGTTGTTGAGGAAGCCAATCCTTGTCCCATATGCAGAAGGAAAATTAAGAAAGTACGACAAATATTTACTGTTTAA 1344 0.4003 MEDTSSSSSPLLPVSTSQLQPEEADNSNEQNHQQPLRNSLSYRANIYMANPHLAAIRGDVCSCLIILITFWLVATIGLVAGIYGTTTLQLGPYSSVLIQLNSIFVRSIKVEQINEPKPGIMLYGFDEPPALDVKTNWSRSYNGFVPHNFYKEWIFYLNRQSQLDIFYDVKSPRFSQFSLVIAQGREELLGWIEEPSFPNTTLSWNIIYGRDKITQKISDPFSYYVALGNLYTQDVEVELKFSVSSVVYNTSSASSRCSPDSSLCRLQLSLSQSGSAVLTTPPPPRGNFEDEWYHVKLSYTPRWTTYFVASGVVTGLIFFIFRICNGFQRYDSETESLQQVHHHVVSERTPLLVNKNDDALSLGSSYESFTSEEEDVTGKPLMKEGGEAENSMKHLCVICFDALRDCFFLPCGHSAACFQCATRVVEEANPCPICRRKIKKVRQIFTV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02149 447 SMART ring_2 396 434 IPR001841 -
Accr3g02149 447 Pfam Domain of unknown function (DUF4792) 120 188 IPR032008 -
Accr3g02149 447 Pfam Domain of unknown function (DUF4793) 213 319 IPR032010 -
Accr3g02149 447 SUPERFAMILY RING/U-box 395 441 - -
Accr3g02149 447 ProSiteProfiles Zinc finger RING-type profile. 396 435 IPR001841 -
Accr3g02149 447 PANTHER OS05G0521000 PROTEIN 37 447 - -
Accr3g02149 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 447 IPR013083 -
Accr3g02149 447 MobiDBLite consensus disorder prediction 1 35 - -
Accr3g02149 447 Pfam Zinc finger, C3HC4 type (RING finger) 394 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02149 Accr-Chr3 38386599 38392956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02149 396 444 C3H Transcription Factor Family AT3G06140 40.816 4.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02149 - - qsa:O6P43_014045 456.062