Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02142 ATGACGTCGGCAAATCTCTCTTCGCCGGTGGCTTCTGCCGTACAGTCCATCCGCCGTTCATTAACTGATCTCTGCGACCGCGAACACCATTACTTATTTGAGAACCCCCGACGGTTCTCGGGCTTGGCCCGGCGACTTCAGCTTGTCTTCAACCAGCTACTCCTGTCGTTTCAATCGCCGCCGCCGGAGACCTTGCCGACGTTGGTGCAGACCGCCCTGAAAGGAATGTCCGGCGATCTGTCGAAGGCTGCAGAAGTTGTTTCCGTTTATGAGAAAAGTAGCAAAATATTTGTCTTGATCAACTGCAAGTCACTCTGCTTATCCCTTGAGGAGCACACTTCCTCCATAGGAGCATGGCTCGCCTTGCTCGATGAGGCTCTTCAAGACGACCCTGAGCTCCAAAAGAAAGCATCTGATCTCTCTGGAGACATGAAGCTCGATCAGTTCAGAGTTACAGAGAACGAAGAGAGAGTTCAATATACGCTGGAAAAAGAAGGGCTAGGAAGACCAACAACCAAGGCGGTGCAGAGTGCTATTGTGATGGATTTGGCTCGCGCTCTGGGGATTGACCCAAGTGATCATACAGAACTGTCAAACGAAATAAAGCTGTTCAAGAATGACCCATTGCGCTCAAATTCTTTATCCGAACGACGGATTTTAGTTTCCCTTGAAAGGATTTTGAACAATTGGTCTGTCGAACCTTGCATTGAGACTCGAAAATTGGACTTCGACCTTGAAGACAATGCAGCAATTTCTCCCTTCAGAAATTTTCTTTGCCCATTGACAAAACAAGTGATGAAGAATCCTGTAGTTCTGGAAACTTCCCAGACCTATGAACGGACAGCTATAGAATACTGGTTTGAGAGGTGTATTCAAGATGCTCGTGACCCAACTTGTCCTGTAACTGGGAAGGTTCTTAAATCCTTGGAACTGAAGCCCAATATTGGATTGGCTGGGACAATAGAAGAGTGGGTTAACAGGGTTGTGGAGCATAAAGTCAAATCTGCTGCTGAACACTTGACTGAGGAGCCACTTTGTATAGATCACGTTGAGCAAGCTTTGGATAACATTAATAGGGTTTCAGAAGACCATCCTCCTAGCAGATATGTAATCAAGAATGCTAGAATTATACAAATGATACTGAAGCTTCTTACTAATAGCTCAAAAGTTATTGGATCACGGTTGAGAAGTAAAGCCTTTATGACTTTAGTTAGCATGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTATCACAAGATTGGCTGTACATAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTGCTGGAGTTCTGCAGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCATTGGTTCTCCTCACAAGTATGGCAGGAAATCTAGAGTTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTACTTTCACGGCTACATGGTGGTCCTGATGCTGTAAAGATAGAGATGGCGTCTCTGCTTGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCTAGGCAAAGTGCTGGAGTACTTGTTGACCTCTTGTTGAAGCCAGAAGGAAGAGAACCAAGTCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAACGCTACCATCCTTGTCGAGTCTCCAGTCTTTCCGTCTCTTGTTAATGTTCTTTTTGATGACAAGGAGCTCTCAAATGAAATTAAAACATTAGCCGCTTCAACAATTGCTAATATCGTATCAAAGCCAGGACGTTGGGAATTAGCATCTGCCGACATGAAGGGGAGTTCAATGCAGTCAGAAAATATGGTTTTCAGACTTCTGCAACTGTTAAACTCAGTGTCATCTCAGTGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAATATCATCCCCACAGGCATCAGAGTCAGTAGCTTTGCATATAAAATATGGGGATGGCTTTAAAATGGTCACACAATTTCTTGAAAACCCAGAAGTTGAACTCAGAATATATGCTTTGAAGCTTTTGAGACAACTATCTGAACTGTTCAGTCAAGATCTGGGAAATGAGCTGAGACTTTCCAACAAGCTCACCATCCTCAAAGAAAAAGTGTTGGATGATCAATCTGCGGAGGAAGAGAGAGCAACTGCGGCATGCATATTTGCCAACCTTTCCTTAACAGAAAATGAAGTAAAATCACTTTTGCGAGGTGATTTCATTAAATGGATTGTCGCCACTCTCAAGAACCAGAGACGCAGCTCCAATGCAAGGATCTCACAGACTGCGGCAAGCTTTTTGGAAGGTCTTCTTGGTCTCTTACTTCACTTCACTAGGAACCTTCACGAGCAAACCCTTACCATTATTAGAGAAAATCGTCTCATGACCATTTTCTGTGAACAGCTGGAATATGCTTCCAAACCAAAGGTAAAAAGACTTGCTACCCTTGGATTAAAAAGCTTGTCAGAAATTGGAAGGACAGTTATTTCTAGGGACACTGAACCCTCACCTTCTGGATTCTTCTCTTCCTTCTTGTTCATCTGTGGGAGGATCTCTAATCAGGACCTTTCGTGTCCTATTCACGACAGTCCCTGTGAGGAAGATAGTCAATTGTGCCTGCTAAAGAGCAACTGTATAAAGCCTCTAAATGATCTCCTCAGTGATACCAATGAAACTAGTGTTCAAATTGCTGCAGTGGAGGCACTTTCAACACTAATATTGGATTATTCATCAAATAGTTTCAAGAGAGCAGTTGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGCAAGATCTGGGGAGCTTCAAGAGAAGACAGTTTGGATCATAGAGAAAATATTGAGAGTGGAAAATCACATACCTAAGTACTCACTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGCAATCCCAACACCAAGGTGCTTGCTCAGCATGCTTTAAATTGCCTAAAGCAAATATCTTTTCTAAGTGAGAAGGCATCTAGCCAACCTCAAGCTAGGAGGTAG 3126 0.4335 MTSANLSSPVASAVQSIRRSLTDLCDREHHYLFENPRRFSGLARRLQLVFNQLLLSFQSPPPETLPTLVQTALKGMSGDLSKAAEVVSVYEKSSKIFVLINCKSLCLSLEEHTSSIGAWLALLDEALQDDPELQKKASDLSGDMKLDQFRVTENEERVQYTLEKEGLGRPTTKAVQSAIVMDLARALGIDPSDHTELSNEIKLFKNDPLRSNSLSERRILVSLERILNNWSVEPCIETRKLDFDLEDNAAISPFRNFLCPLTKQVMKNPVVLETSQTYERTAIEYWFERCIQDARDPTCPVTGKVLKSLELKPNIGLAGTIEEWVNRVVEHKVKSAAEHLTEEPLCIDHVEQALDNINRVSEDHPPSRYVIKNARIIQMILKLLTNSSKVIGSRLRSKAFMTLVSMAKDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLEFCSDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLLSRLHGGPDAVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLLKPEGREPSLQALYNLSGLDDNATILVESPVFPSLVNVLFDDKELSNEIKTLAASTIANIVSKPGRWELASADMKGSSMQSENMVFRLLQLLNSVSSQCQVYVLRILYGIISSPQASESVALHIKYGDGFKMVTQFLENPEVELRIYALKLLRQLSELFSQDLGNELRLSNKLTILKEKVLDDQSAEEERATAACIFANLSLTENEVKSLLRGDFIKWIVATLKNQRRSSNARISQTAASFLEGLLGLLLHFTRNLHEQTLTIIRENRLMTIFCEQLEYASKPKVKRLATLGLKSLSEIGRTVISRDTEPSPSGFFSSFLFICGRISNQDLSCPIHDSPCEEDSQLCLLKSNCIKPLNDLLSDTNETSVQIAAVEALSTLILDYSSNSFKRAVDELEQLGVVDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKYSLNQSLVRGLVEAFKHGNPNTKVLAQHALNCLKQISFLSEKASSQPQARR 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02142 1041 Coils Coil 483 503 - -
Accr3g02142 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 1030 - -
Accr3g02142 1041 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Accr3g02142 1041 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Accr3g02142 1041 Pfam U-box domain 257 326 IPR003613 GO:0004842|GO:0016567
Accr3g02142 1041 Gene3D - 893 1040 IPR011989 -
Accr3g02142 1041 SUPERFAMILY RING/U-box 251 327 - -
Accr3g02142 1041 Gene3D - 343 853 IPR011989 -
Accr3g02142 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Accr3g02142 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Accr3g02142 1041 SMART arm_5 809 851 IPR000225 GO:0005515
Accr3g02142 1041 SMART arm_5 893 935 IPR000225 GO:0005515
Accr3g02142 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Accr3g02142 1041 SMART arm_5 669 710 IPR000225 GO:0005515
Accr3g02142 1041 SUPERFAMILY ARM repeat 895 1024 IPR016024 -
Accr3g02142 1041 SUPERFAMILY ARM repeat 348 785 IPR016024 -
Accr3g02142 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 342 IPR013083 -
Accr3g02142 1041 CDD RING-Ubox_PUB 257 311 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02142 Accr-Chr3 38147609 38152414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02142 254 1030 U-box Gene Family AT1G20780 30.139 2.17e-92 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02142 - - pcin:129304037 1697.56