Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02141 ATGACGTCGGCAAATCTCTCTTCGCCGGTGGCTTCTGCCGTACAGTCCATCCGCCGTTCATTAACTGATCTCTGCGACCGCGAACACCATTACTTATTTGAGAACCCCCGACGGTTCTCGGGCTTGGCCCGGCGACTTCAGCTTGTCTTCAACCAGCTACTCCTGTCGTTTCAATCGCCGCCGCCGGAGACCTTGCCGACGTTGGTGCAGACCGCCCTGAAAGGAATGTCCGGCGATCTGTCGAAGGCTGCAGAAGTTGTTTCCGTTTATGAGAAAAGTAGCAAAATATTTGTCTTGATCAACTGCAAGTCACTCTGCTTATCCCTTGAGGAGCACACTTCCTCCATAGGAGCATGGCTCGCCTTGCTCGATGAGGCTCTTCAAGACGACCCTGAGCTCCAAAAGAAAGCATCTGATCTCTCTGGAGACATGAAGCTCGATCAGTTCAGAGTTACAGAGAACGAAGAGAGAGTTCAATATACGCTGGAAAAAGAAGGGCTAGGAAGACCAACAACCAAGGCGGTGCAGAGTGCTATTGTGATGGATTTGGCTCGCGCTCTGGGGATTGACCCAAGTGATCATACAGAACTGTCAAACGAAATAAAGCTGTTCAAGAATGACCCATTGCGCTCAAATTCTTTATCCGAACGACGGATTTTAGTTTCCCTTGAAAGGATTTTGAACAATTGGTCTGTCGAACCTTGCATTGAGACTCGAAAATTGGACTTCGACCTTGAAGACAATGCAGCAATTTCTCCCTTCAGAAATTTTCTTTGCCCATTGACAAAACAAGTGATGAAGAATCCTGTAGTTCTGGAAACTTCCCAGACCTATGAACGGACAGCTATAGAATACTGGTTTGAGAGGTGTATTCAAGATGCTCGTGACCCAACTTGTCCTGTAACTGGGAAGGTTCTTAAATCCTTGGAACTGAAGCCCAATATTGGATTGGCTGGGACAATAGAAGAGTGGGTTAACAGGGTTGTGGAGCATAAAGTCAAATCTGCTGCTGAACACTTGACTGAGGAGCCACTTTGTATAGATCACGTTGAGCAAGCTTTGGATAACATTAATAGGGTTTCAGAAGACCATCCTCCTAGCAGATATGTAATCAAGAATGCTAGAATTATACAAATGATACTGAAGCTTCTTACTAATAGCTCAAAAGTTATTGGATCACGGTTGAGAAGTAAAGCCTTTATGACTTTAGTTAGCATGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTATCACAAGATTGGCTGTACATAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTGCTGGAGTTCTGCAGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCATTGGTTCTCCTCACAAGTATGGCAGGAAATCTAGAGTTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTACTTTCACGGCTACATGGTGGTCCTGATGCTGTAAAGATAGAGATGGCGTCTCTGCTTGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCTAGGCAAAGTGCTGGAGTACTTGTTGACCTCTTGTTGAAGCCAGAAGGAAGAGAACCAAGTCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAACGCTACCATCCTTGTCGAGTCTCCAGTCTTTCCGTCTCTTGTTAATGTTCTTTTTGATGACAAGGAGCTCTCAAATGAAATTAAAACATTAGCCGCTTCAACAATTGCTAATATCGTATCAAAGCCAGGACGTTGGGAATTAGCATCTGCCGACATGAAGGGGAGTTCAATGCAGTCAGAAAATATGGTTTTCAGACTTCTGCAACTGTTAAACTCAGTGTCATCTCAGTGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAATATCATCCCCACAGGCATCAGAGTCAGTAGCTTTGCATATAAAATATGGGGATGGCTTTAAAATGGTCACACAATTTCTTGAAAACCCAGAAGTTGAACTCAGAATATATGCTTTGAAGCTTTTGAGACAACTATCTGAACTGTTCAGTCAAGATCTGGGAAATGAGCTGAGACTTTCCAACAAGCTCACCATCCTCAAAGAAAAAGTGTTGGATGATCAATCTGCGGAGGAAGAGAGAGCAACTGCGGCATGCATATTTGCCAACCTTTCCTTAACAGAAAATGAAGTAAAATCACTTTTGCGAGGTGATTTCATTAAATGGATTGTCGCCACTCTCAAGAACCAGAGACGCAGCTCCAATGCAAGGATCTCACAGACTGCGGCAAGCTTTTTGGAAGGTCTTCTTGGTCTCTTACTTCACTTCACTAGGAACCTTCACGAGCAAACCCTTACCATTATTAGAGAAAATCGTCTCATGACCATTTTCTGTGAACAGCTGGAATATGCTTCCAAACCAAAGGTAAAAAGACTTGCTACCCTTGGATTAAAAAGCTTGTCAGAAATTGGAAGGACAGTTATTTCTAGGGACACTGAACCCTCACCTTCTGGATTCTTCTCTTCCTTCTTGTTCATCTGTGGGAGGATCTCTAATCAGGACCTTTCGTGTCCTATTCACGACAGTCCCTGTGAGGAAGATAGTCAATTGTGCCTGCTAAAGAGCAACTGTATAAAGCCTCTAAATGATCTCCTCAGTGATACCAATGAAACTAGTGTTCAAATTGCTGCAGTGGAGGCACTTTCAACACTAATATTGGATTATTCATCAAATAGTTTCAAGAGAGCAGTTGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGCAAGATCTGGGGAGCTTCAAGAGAAGACAGTTTGGATCATAGAGAAAATATTGAGAGTGGAAAATCACATACCTAAGTACTCACTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGCAATCCCAACACCAAGGTGCTTGCTCAGCATGCTTTAAATTGCCTAAAGCAAATATCTTTTCTAAGTGAGAAGGCATCTAGCCAACCTCAAGCTAGGAGATCTGTGTAA 3132 0.433 MTSANLSSPVASAVQSIRRSLTDLCDREHHYLFENPRRFSGLARRLQLVFNQLLLSFQSPPPETLPTLVQTALKGMSGDLSKAAEVVSVYEKSSKIFVLINCKSLCLSLEEHTSSIGAWLALLDEALQDDPELQKKASDLSGDMKLDQFRVTENEERVQYTLEKEGLGRPTTKAVQSAIVMDLARALGIDPSDHTELSNEIKLFKNDPLRSNSLSERRILVSLERILNNWSVEPCIETRKLDFDLEDNAAISPFRNFLCPLTKQVMKNPVVLETSQTYERTAIEYWFERCIQDARDPTCPVTGKVLKSLELKPNIGLAGTIEEWVNRVVEHKVKSAAEHLTEEPLCIDHVEQALDNINRVSEDHPPSRYVIKNARIIQMILKLLTNSSKVIGSRLRSKAFMTLVSMAKDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLEFCSDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLLSRLHGGPDAVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLLKPEGREPSLQALYNLSGLDDNATILVESPVFPSLVNVLFDDKELSNEIKTLAASTIANIVSKPGRWELASADMKGSSMQSENMVFRLLQLLNSVSSQCQVYVLRILYGIISSPQASESVALHIKYGDGFKMVTQFLENPEVELRIYALKLLRQLSELFSQDLGNELRLSNKLTILKEKVLDDQSAEEERATAACIFANLSLTENEVKSLLRGDFIKWIVATLKNQRRSSNARISQTAASFLEGLLGLLLHFTRNLHEQTLTIIRENRLMTIFCEQLEYASKPKVKRLATLGLKSLSEIGRTVISRDTEPSPSGFFSSFLFICGRISNQDLSCPIHDSPCEEDSQLCLLKSNCIKPLNDLLSDTNETSVQIAAVEALSTLILDYSSNSFKRAVDELEQLGVVDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKYSLNQSLVRGLVEAFKHGNPNTKVLAQHALNCLKQISFLSEKASSQPQARRSV 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02141 1043 Coils Coil 483 503 - -
Accr3g02141 1043 SUPERFAMILY RING/U-box 251 327 - -
Accr3g02141 1043 Gene3D - 341 853 IPR011989 -
Accr3g02141 1043 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 1030 - -
Accr3g02141 1043 SMART arm_5 572 615 IPR000225 GO:0005515
Accr3g02141 1043 SMART arm_5 942 983 IPR000225 GO:0005515
Accr3g02141 1043 SMART arm_5 809 851 IPR000225 GO:0005515
Accr3g02141 1043 SMART arm_5 893 935 IPR000225 GO:0005515
Accr3g02141 1043 SMART arm_5 534 571 IPR000225 GO:0005515
Accr3g02141 1043 SMART arm_5 669 710 IPR000225 GO:0005515
Accr3g02141 1043 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Accr3g02141 1043 Gene3D - 893 1041 IPR011989 -
Accr3g02141 1043 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Accr3g02141 1043 SUPERFAMILY ARM repeat 348 1024 IPR016024 -
Accr3g02141 1043 CDD RING-Ubox_PUB 257 311 IPR045210 -
Accr3g02141 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 340 IPR013083 -
Accr3g02141 1043 Pfam U-box domain 257 326 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02141 Accr-Chr3 38147609 38152534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02141 254 1030 U-box Gene Family AT1G20780 30.139 2.33e-92 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02141 - - pcin:129304037 1697.56