Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02125 ATGTCTAGGATATGTGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTATTTTCACAGAAAGGAGAAATAACAGATGTAAAGCTGATGCGCACCAAAGATGGCAAGAGTCGGCAATTTGGTTTTATTGGTTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACTTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCGGATATTCCTCATCCATGGAGTCGACATTCATTGAAGAAAGGGGAGAAAGTGATCCAAGGTGGGGAGAAAGATGCTGAAAATAGAAGTAGTGCTAAGGCACAAAGAGATGGAGAGAATTTGAAGGAGAATGTTGACATTGATGATCCCCAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCCAAGTCAAAATTGTGGGCAAATGATACATTATCAGTGTTGGATAATGTTAGTGACAAGCAAAAATTAGCTGAGAATAAAAGCAAGGATCTTTCAGTTCCAAAACATGATGAGTTACCTCAAAGTGGCTCATTGGACGATGGGTCCTCAGATGGCTCATTAGATGATGGATCCTCAGGTAGTCATGAATCTGAGAAACCAAATAATATTGTCCATGATGATGCCATTTCAGATACAGAATATTTCAAGAGTCGGGTAACAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGATGAAGAAAACAATGCCTCTGTGAGCAATGATGACGAGAATGAAGAAGGCAATGATAGTCATGCTGAGGAAGATGTAGAAAATTGTGATGATAAATCTTTGAAAGAAAGTGGAAGTGGTGATGCTCAAAATTTAGACCTTTCAGGCCAAGAAGATATTTGTAGTGAGGATATTGACCATGAAAAGGTTGAAGTGAGACGCCCTTCCAGTCTTTCTGGTGATGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTCTGGAAAATGAGAAAGGAGTTTTTGAGTCTTGTCGACTGTTTGTCCGCAATCTGCCATATACAGCCATTGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCCCTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAAAGGTCCAAAGGAATAGCTTATATTCATTACACACTTCCAGAACTTGCAGCCAGGGCACTAGAAGAGTTAGACAAATCAATCTTCCAAGGAAGACTACTGCATGTTTTGCCAGCCTTGCAAAGACCTTCAGACATCAAAGAAAAGAATACATCAATGGACCAAAGCTCCAGAACATTTAAGAAAAAGAGAGAGGAGGAGCGAAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAGGTGATTTGCTGGACCGAGAAGCTGATGACATTGCCGTGCGCATTGCTTTGGGGGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGTGTCTTTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGGAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAATTAGCAAAGATGTTTGGGAAATTTGGGAGTTTGGACAAAATAATTCTGCCTCCAACAAAGACAGTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCGTACAAGCGTTTTAAAGATGCACCATTGTATTTGGAATGGGCTCCATCCAATGTACTTAGCCAAAGTTTAACATCTGAGAGCAATGAAAAGAGTTGTGCAATTGGTGAAAATGAGGTCAAACGGATGAAACTGGAACAACATCTTAAAGGATTATCAGATGGGGACATCGATCAGGACAGAGTTGAGGCCCGGTCTCTATTTGTCAAGAACATCAACTTTAGGACATCGGATGAGAGTTTGAAGAATCATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGCCAAGGTCAAGAAGCATTTGAAAAATGGAAAACAAGTTTCTATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACCGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAAATCTGTCATGCCAAGGACAGACAAGGACCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGAAATGTAGCTTTTGAGGCGACAGAGAAAGAATTGAGACAGTTGTTCAGCCCATTCGGTCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAACAAGAGGCACAAAACGCACTTAATGCTCTTTCAAGCACCCACTTGTACGGCAGGCATCTGGTGTTGGAGAGAGCAAAGGAAGGTGAGAGTCTGGAGGAACTACGGGCTCGAACGGCCGCCCAATTTAGTGATGAACAAAATGGATTTCAAAAGTTATCCAAGAAAAGGAAGCTCTTGTCAATCTCGGACGGAGGGAAGATGGAGTTTGAAAGAATTGCTGATTAG 2628 0.411 MSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPHPWSRHSLKKGEKVIQGGEKDAENRSSAKAQRDGENLKENVDIDDPQLQEFLQVMQPRAKSKLWANDTLSVLDNVSDKQKLAENKSKDLSVPKHDELPQSGSLDDGSSDGSLDDGSSGSHESEKPNNIVHDDAISDTEYFKSRVTKEWSDSENSDDDEENNASVSNDDENEEGNDSHAEEDVENCDDKSLKESGSGDAQNLDLSGQEDICSEDIDHEKVEVRRPSSLSGDEVPEQGVPSSCLENEKGVFESCRLFVRNLPYTAIEEELEEHFSKFGPVSQVHLVVDKDTKRSKGIAYIHYTLPELAARALEELDKSIFQGRLLHVLPALQRPSDIKEKNTSMDQSSRTFKKKREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKGDLLDREADDIAVRIALGETQVIAETKKALKNAGVNVVSLEEFANGQKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTVALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSLTSESNEKSCAIGENEVKRMKLEQHLKGLSDGDIDQDRVEARSLFVKNINFRTSDESLKNHFSEHMKEGRILSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQICHAKDRQGPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALNALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGFQKLSKKRKLLSISDGGKMEFERIAD 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02125 875 SMART rrm1_1 339 412 IPR000504 GO:0003723
Accr3g02125 875 SMART rrm1_1 534 601 IPR000504 GO:0003723
Accr3g02125 875 SMART rrm1_1 753 824 IPR000504 GO:0003723
Accr3g02125 875 SMART rrm1_1 654 732 IPR000504 GO:0003723
Accr3g02125 875 SMART rrm1_1 3 75 IPR000504 GO:0003723
Accr3g02125 875 FunFam Multiple RNA-binding domain-containing protein 1 746 852 - -
Accr3g02125 875 CDD RRM3_RBM19_RRM2_MRD1 339 412 - -
Accr3g02125 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 736 IPR000504 GO:0003723
Accr3g02125 875 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 270 419 - -
Accr3g02125 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Accr3g02125 875 FunFam Nucleotide/nucleic acid binding protein 649 743 - -
Accr3g02125 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 533 605 IPR000504 GO:0003723
Accr3g02125 875 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Accr3g02125 875 SMART rrm2_1 3 75 IPR003954 GO:0003676
Accr3g02125 875 SMART rrm2_1 339 412 IPR003954 GO:0003676
Accr3g02125 875 SMART rrm2_1 654 732 IPR003954 GO:0003676
Accr3g02125 875 MobiDBLite consensus disorder prediction 169 186 - -
Accr3g02125 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 416 IPR000504 GO:0003723
Accr3g02125 875 MobiDBLite consensus disorder prediction 237 266 - -
Accr3g02125 875 Gene3D - 1 126 IPR012677 -
Accr3g02125 875 Gene3D - 627 745 IPR012677 -
Accr3g02125 875 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 655 729 IPR000504 GO:0003723
Accr3g02125 875 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Accr3g02125 875 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 535 597 IPR000504 GO:0003723
Accr3g02125 875 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 754 821 IPR000504 GO:0003723
Accr3g02125 875 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 410 IPR000504 GO:0003723
Accr3g02125 875 MobiDBLite consensus disorder prediction 420 448 - -
Accr3g02125 875 MobiDBLite consensus disorder prediction 187 201 - -
Accr3g02125 875 CDD RRM5_RBM19_like 654 734 IPR034423 -
Accr3g02125 875 Gene3D - 746 852 IPR012677 -
Accr3g02125 875 Gene3D - 525 626 IPR012677 -
Accr3g02125 875 CDD RRM6_RBM19_RRM5_MRD1 752 826 - -
Accr3g02125 875 Gene3D - 223 426 IPR012677 -
Accr3g02125 875 CDD RRM4_RBM19_RRM3_MRD1 533 604 - -
Accr3g02125 875 CDD RRM1_MRD1 2 77 - -
Accr3g02125 875 FunFam Multiple RNA-binding domain-containing protein 1 524 626 - -
Accr3g02125 875 MobiDBLite consensus disorder prediction 202 236 - -
Accr3g02125 875 MobiDBLite consensus disorder prediction 295 313 - -
Accr3g02125 875 SUPERFAMILY RNA-binding domain, RBD 323 426 IPR035979 GO:0003676
Accr3g02125 875 MobiDBLite consensus disorder prediction 169 326 - -
Accr3g02125 875 FunFam Multiple RNA-binding domain-containing protein 1 1 128 - -
Accr3g02125 875 MobiDBLite consensus disorder prediction 422 448 - -
Accr3g02125 875 MobiDBLite consensus disorder prediction 83 128 - -
Accr3g02125 875 SUPERFAMILY RNA-binding domain, RBD 530 612 IPR035979 GO:0003676
Accr3g02125 875 SUPERFAMILY RNA-binding domain, RBD 652 827 IPR035979 GO:0003676
Accr3g02125 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 752 828 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02125 Accr-Chr3 37570531 37590563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02125 644 844 Eukaryotic Initiation Factors Gene Family AT1G49760 28.169 1.62e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02125 K14787 - cave:132177808 1116.68