Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02120 ATGGCCTCTCAAGACAATCACTCTCACATCTTCCAGTGGCATTTCATTGAAATAAATCACTCAAGCTTCCACTCATATAGCCATGGCATCTTTCTCCTACTTTTCTTCTTCTCCATCGTCATTCTGATTGCCGTGTTGTTCCTTCTCGCCCACTTATGTCGCCGGCGGCAAGGCAGCGACGCCTCTCACGCTGCCCCTGTGGCCACTAGTTTTCATTGGGGTAAGTTAGAGATGGGACCAATGGAGAATAATAAGAGTATTATGGGAGACACAAATGGTGAATGCTGCATATGTTTGAGTGTGTTAAATGAAGGAGGAAAAGTGAAGGTGTTGCCAGAATGTGAGCATGCTTACCATTCAGTGTGTGTGGAGATGTGGTTAAGTGCAAACCCTAGTTGTCCTCTTTGCAGGGCTTCACTTCATAGATTTATGAGTAATGCTATCAACAACAACAATGTATGA 462 0.4437 MASQDNHSHIFQWHFIEINHSSFHSYSHGIFLLLFFFSIVILIAVLFLLAHLCRRRQGSDASHAAPVATSFHWGKLEMGPMENNKSIMGDTNGECCICLSVLNEGGKVKVLPECEHAYHSVCVEMWLSANPSCPLCRASLHRFMSNAINNNNV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02120 153 SMART FANCL_C_2 91 144 - -
Accr3g02120 153 Pfam Ring finger domain 94 137 IPR001841 -
Accr3g02120 153 SMART ring_2 95 136 IPR001841 -
Accr3g02120 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 142 - -
Accr3g02120 153 SUPERFAMILY RING/U-box 94 143 - -
Accr3g02120 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 143 IPR013083 -
Accr3g02120 153 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02120 Accr-Chr3 37381631 37382092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02120 8 141 C3H Transcription Factor Family AT3G11110 30.769 5.23e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02120 - - pcin:129302735 172.17