Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02040 ATGGAGATATCGTTGTTAAACGTGCTTGTTAATGGGATAACCTCGTTTTTGCGCTCAGAATTTGCCAGAAACTTGAGCTCAGAACCAATCCTAAAGTATTACCAAAAGGAAGAGGAGATACTTAAGTTCTTAAAGCCATTACTTGAAGCCATCGCTGATACTGATTTAGCTTCTGATGAAGTGCTTTTGGAGATATTTGAAGAACTGAATCAGGCTGTGAATGAACTGAGGGAGCTTTTCGAGAGTTGGCAACTATTGTGTAGCAAAATCTACATTATTCTGCAAGTTGAATCCTTGTTATCTAAGATTCAGATTTTGGAACTAAACATTTTCAAGCAACTAAAGGCTTCCCATCAACGTATCCCTAGTGAACTAAGTCTTTCACACATAGAGCACTGTGTTGAGAAGATAAACAATTTGGGACATGAAGAAACATCATCATCTATCATCAAGGAAGCTATCATGGAACAAATGGAAGGCTTAGGACCAAGTTCAGAGGTCCTTGAAAACCTTGCTGAGAACCTAGGCCTGAGCTCTAATCAAGAGCTTCTAATTGAGGTTGTGACACTTGAAAAGTTGAAGGAGAATGCAGAACAGATTGGAAATACTACAGAAGCTGAATATCTCAACCAGATAATTGCTCTTGTGACTTGTATTCATGAGAGACTTATAACGCTCAAGGAAGCCCAGATGTGTAGCCCAGTTCCAATACCTCAAGATTTTCGCTGCCCCCTCTCTTTGGAGTTGATGAAAGATCCTGTGATTGTGTCGTCCGGGCAAACTTACGAACGAGCTTTCATTAAGAACTGGATCGATCTAGGGCTCACTGTTTGTCCAAAGACGCATCAGACTTTGGCTCATACAAACCTGATACCAAATTATACTGTGAAGGCATTGATTTCAAATTGGTGTGAATTGAACAATGTCAAGCTAGTTGATCCAATAGTGTCCTCAAATTTGGAAGGTTCTTCAAGTGACATGATTTGTAGCCAAAGTTTGGATATTTTAAGGATATCACAAACAAGTTCTAATAACATGTCTTCTAGCTTAGATGAAATGAAGGTGGATTCAGATGGCCAAGATTCTATGTCAACACCATCTAGAAGGGAATCTTCCAATGACTTCAGCCAAGATTCCTATGCATTTTTGAATGAAAATTTTCCTCAAGGAACAAAAGGTAATGATGGCAATAATGCTTCTCAGACATTGGACAATTCAGGTGAAAACAAAGATGCTTCAATTGAGGTTAATCTAAGGTCAGACTTAGCTAGTCCTCGAACATTAGAAGCAAGGTATCAAATCTTAAATATATGGCAGCAACCATCAAAGAATTTAAGGTTAGCATCTTCACCTGTAAGTCCTTCTGGCATTGAAACCCTAGTTCTGAATTTGGCTAAGGACTTGAGGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGCACAACTTCGCCTTCTTTCTAAGCACAATATGGAGAATAGAATTGTGATTGCGAATTGTGGAGTCATTAGTCTACTAGTTGATCTACTTCAGTCGACTGATACAAAGATCCAAGAAAATGCCGTTACAGCTCTTCTAAACTTATCAATCTATGATAATAACAAATGCGAAATTGCAAATGCTGGTGCAATTGATTCTCTAATTCGTGTTCTTGAAACAGGAAGTCCTGAAGCCAGAGAGAACTCGGCAGCCTCACTTTATAGCCTATCAATGATGGAAGAAAATAGGATTAGGATAGGGAGATCAGGGGCAATTAAGCCACTAGTTGATTTGCTAGCAAATGGAACTTTAACAGGGAAAAAAGATGCTTCCACCGCTTTGTTCAACCTGTCTCTATTTCAAGAAAACAAGGGCCGGATCGTGCAAGCTGGTGCCGTGAAGCACCTCGTGGAGCTGATGGATCCAGCGTCCGGGATGGTGGAGAAGGCGGTGGCTGTTTTGGCGAATCTTGCATCAATTCCCGAAGGTAGAAATGCAATTGGAAATGGAGGAGCTATTCGTATTCTAGTTGATGTTATCGAATTGGGTTCTGCAAGAGGCAAAGAAAATGCAGCTGCCACTCTTCTGCTTATTTGTTCAAATAGTACCAGGTTCTTAAACCTTATGATCCATGAAGGAGCCATCCCACCATTAGTAGCATTGTCACTATCAGGCACCGCAAGGGCCAAAGAAAAAGCACAAGCTCTACTTAACCATTGTAGAAGTCAAAGACATGGTAATGTAATAAGAAGTTGA 2235 0.4018 MEISLLNVLVNGITSFLRSEFARNLSSEPILKYYQKEEEILKFLKPLLEAIADTDLASDEVLLEIFEELNQAVNELRELFESWQLLCSKIYIILQVESLLSKIQILELNIFKQLKASHQRIPSELSLSHIEHCVEKINNLGHEETSSSIIKEAIMEQMEGLGPSSEVLENLAENLGLSSNQELLIEVVTLEKLKENAEQIGNTTEAEYLNQIIALVTCIHERLITLKEAQMCSPVPIPQDFRCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALISNWCELNNVKLVDPIVSSNLEGSSSDMICSQSLDILRISQTSSNNMSSSLDEMKVDSDGQDSMSTPSRRESSNDFSQDSYAFLNENFPQGTKGNDGNNASQTLDNSGENKDASIEVNLRSDLASPRTLEARYQILNIWQQPSKNLRLASSPVSPSGIETLVLNLAKDLRSSSIDTQREATAQLRLLSKHNMENRIVIANCGVISLLVDLLQSTDTKIQENAVTALLNLSIYDNNKCEIANAGAIDSLIRVLETGSPEARENSAASLYSLSMMEENRIRIGRSGAIKPLVDLLANGTLTGKKDASTALFNLSLFQENKGRIVQAGAVKHLVELMDPASGMVEKAVAVLANLASIPEGRNAIGNGGAIRILVDVIELGSARGKENAAATLLLICSNSTRFLNLMIHEGAIPPLVALSLSGTARAKEKAQALLNHCRSQRHGNVIRS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02040 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Accr3g02040 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 583 625 IPR000225 GO:0005515
Accr3g02040 744 Gene3D - 429 743 IPR011989 -
Accr3g02040 744 Pfam Armadillo/beta-catenin-like repeat 492 529 IPR000225 GO:0005515
Accr3g02040 744 Pfam Armadillo/beta-catenin-like repeat 614 652 IPR000225 GO:0005515
Accr3g02040 744 Pfam Armadillo/beta-catenin-like repeat 574 611 IPR000225 GO:0005515
Accr3g02040 744 SUPERFAMILY ARM repeat 460 733 IPR016024 -
Accr3g02040 744 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Accr3g02040 744 PANTHER U BOX DOMAIN-CONTAINING 29 733 - -
Accr3g02040 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Accr3g02040 744 SMART arm_5 490 530 IPR000225 GO:0005515
Accr3g02040 744 SMART arm_5 653 693 IPR000225 GO:0005515
Accr3g02040 744 SMART arm_5 531 571 IPR000225 GO:0005515
Accr3g02040 744 SMART arm_5 572 612 IPR000225 GO:0005515
Accr3g02040 744 SMART arm_5 613 652 IPR000225 GO:0005515
Accr3g02040 744 FunFam RING-type E3 ubiquitin transferase 448 739 - -
Accr3g02040 744 Coils Coil 180 200 - -
Accr3g02040 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 501 543 IPR000225 GO:0005515
Accr3g02040 744 Coils Coil 66 86 - -
Accr3g02040 744 CDD RING-Ubox_PUB 238 290 IPR045210 -
Accr3g02040 744 Coils Coil 743 744 - -
Accr3g02040 744 MobiDBLite consensus disorder prediction 344 411 - -
Accr3g02040 744 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Accr3g02040 744 SUPERFAMILY RING/U-box 234 313 - -
Accr3g02040 744 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Accr3g02040 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 665 IPR000225 GO:0005515
Accr3g02040 744 FunFam RING-type E3 ubiquitin transferase 236 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02040 Accr-Chr3 31729819 31733041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g02040 1 743 U-box Gene Family AT5G67340 48.387 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02040 - - pcin:129303726 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01252 4 12033914 12036986 Accr3g02040 3 31729819 31733041 CCT