Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01908 ATGAGTGAGTGGAGTTGTGAGGACGAGAAGCGGTTTCAAGTTGCTCTATTTTGTTATCCGGAGGATTTTCCCAATCGATGGGAGAAGATCGCTGAGGTGGTTGGCTTCTCCAAGGAGATAGTTTACCAACGATATCAAATTCTCCAAATTGAATTGGGTCAGGTTTCACCACCGCAATACACAAACTCTTCCATTAATAATCAGCCCCACAAGAATAATAGGAAATTTTGGACTTTGGAAGAACATGCACTGTTCTTGCTGGGAGAGCAGAAATATGGCAGGGGACACTGGAAGAATATCTCTGAAAAGGCAGTAGGGACAAGGAACGCAACTCAAGTGGCAAGCCATGCTCAAAAGTTTTATATTCGCCAAAGAGAAAAGGAGACAATAGTGCACAGTAGAGGAAGCATCCATGATTTCACTTTGGCAAACTACCCACCAGAATATCTGAAATATCTTCTTTCTTCTCGTCCTCACTTGATGCCTGGCTCATGCAGGATAATGCAACAACCCAACACATCAATTCATAGACATCTTGCACTACATAATGACAATCACTCATTGCCAGTGACTCAATTAGGAACTCATATTCCTTCAACTCTTTATCAATCCCATCAAGATGCCTTACCAACGCATTATGATCATCTAGTAATTGAAGGAAAAGCTGAGGATCTTTCCAGCATTCGAGGGAACACTCATCCAGGGGTTTCTGATGAAGTCATGGATGAAAAGGATATGAATGTTAATAATATATGTGACAATGAGCAAGGAAATACCATTGCAGGGTCCTCTCCTTCACAGAGAGAGGACCTCAAGTCTGGAAATACCCGTCGCTACTGA 840 0.4226 MSEWSCEDEKRFQVALFCYPEDFPNRWEKIAEVVGFSKEIVYQRYQILQIELGQVSPPQYTNSSINNQPHKNNRKFWTLEEHALFLLGEQKYGRGHWKNISEKAVGTRNATQVASHAQKFYIRQREKETIVHSRGSIHDFTLANYPPEYLKYLLSSRPHLMPGSCRIMQQPNTSIHRHLALHNDNHSLPVTQLGTHIPSTLYQSHQDALPTHYDHLVIEGKAEDLSSIRGNTHPGVSDEVMDEKDMNVNNICDNEQGNTIAGSSPSQREDLKSGNTRRY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01908 279 SMART sant 1 51 IPR001005 -
Accr3g01908 279 SMART sant 73 123 IPR001005 -
Accr3g01908 279 MobiDBLite consensus disorder prediction 254 270 - -
Accr3g01908 279 CDD SANT 77 120 IPR001005 -
Accr3g01908 279 Gene3D - 1 56 - -
Accr3g01908 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 72 124 IPR006447 GO:0003677
Accr3g01908 279 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 191 IPR043363 -
Accr3g01908 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 125 IPR017930 -
Accr3g01908 279 ProSiteProfiles SANT domain profile. 77 125 IPR017884 -
Accr3g01908 279 ProSiteProfiles Myb-like domain profile. 69 121 IPR001005 -
Accr3g01908 279 MobiDBLite consensus disorder prediction 254 279 - -
Accr3g01908 279 SUPERFAMILY Homeodomain-like 70 125 IPR009057 -
Accr3g01908 279 Pfam Myb-like DNA-binding domain 77 119 IPR001005 -
Accr3g01908 279 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Accr3g01908 279 Gene3D - 75 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01908 Accr-Chr3 26895614 26896627 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr3g01908 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01908 - - egt:105968807 116.316