Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01879 ATGGCTAGTAATGGTGCAAGGGAGCCCTTGTTGCCCCAATCACCAGATCCAGCCCTTCCAAAAACAAATGGCCAGGTTAGCAGAAGGTATCTCCGTTGTAGAAGTGCTCCTCTTGCTAATGTTGATCTACCTGAGAAAACCAACATTGGATCAATTCATCGTTCTGACTCCATATTTGGGAAGTTACATCCAAGTTTTCGAAATGTGGCTATGTGTCTTATAGGGTATTTAGGTATTGGAGCTGTGATCTTCTATCTTGTCAGGCATCAGATCACAGGGATGAAAACAGAGGCGGTCCTTGATGCTATATACTTTACAATTGTCACGATGACCACAGTTGGATATGGAGACCTTGTGCCAAATAGCGACCTTACAAAACTACTTGCCTGTGCTTTTGTCTTCACGGGAATGGCACTAGTTGGTTTAATCTTAAGTAAAGCAGCAGACTACTTGGTTGAGAAACAGGAAGTTTTGATAATCAAAGCTCTGCATATGAAACATAAAGTTGGTCCAACTCAAATTCTACAGGAGGCTGAGGTCAACAGGACGTTGTATAAATTTTTTGTGGCTTTTTTCCTGCTTTTGTTGCTCATTATTATGGGGACGGTTTTCTTAGTTGCTGTTGAGAAATTGGAAGTTATCGATGCATTTTATTGTGTCTGTTGTACAATAACAACCCTGGGTTATGGTGATAAAAGCTTCTCAAGTGAAGGAGGAAGAGTCTTTGCTGTGTTTTGGATATTGACTGGTACTATTTGCTTAGCTCAGCTTTTCCTTTACATTGCTGAGATGAACACCGAAAAAAGACAAAAGGAAATCACTAAGATGGTTCTTACACGGAGGACAACCAATGCAGACTTGGAGGCAGCAGATATTGATCATGATGGAGCTGTTGGGTTTGCTGAGTTCATTTTCTATAAGCTCAAAGAGATGGGGAAGATAAGTCAAGAAGATATTGAACTCGTAAGGAAACAGTTTGAGGAGCTTGATTTTGATCATTCTGGTACTCTTTCACCTTCTGATATAAAACTTGCTCAGGCACCTTCTCCATCTTAG 1056 0.4072 MASNGAREPLLPQSPDPALPKTNGQVSRRYLRCRSAPLANVDLPEKTNIGSIHRSDSIFGKLHPSFRNVAMCLIGYLGIGAVIFYLVRHQITGMKTEAVLDAIYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFTGMALVGLILSKAADYLVEKQEVLIIKALHMKHKVGPTQILQEAEVNRTLYKFFVAFFLLLLLIIMGTVFLVAVEKLEVIDAFYCVCCTITTLGYGDKSFSSEGGRVFAVFWILTGTICLAQLFLYIAEMNTEKRQKEITKMVLTRRTTNADLEAADIDHDGAVGFAEFIFYKLKEMGKISQEDIELVRKQFEELDFDHSGTLSPSDIKLAQAPSPS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01879 351 FunFam Calcium-activated outward-rectifying potassium channel 1 63 158 - -
Accr3g01879 351 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 69 320 IPR003280 GO:0005267|GO:0016020|GO:0071805
Accr3g01879 351 Gene3D - 65 163 - -
Accr3g01879 351 MobiDBLite consensus disorder prediction 332 351 - -
Accr3g01879 351 FunFam Two-pore potassium channel 1 167 275 - -
Accr3g01879 351 SUPERFAMILY Voltage-gated potassium channels 180 314 - -
Accr3g01879 351 MobiDBLite consensus disorder prediction 1 24 - -
Accr3g01879 351 Pfam Ion channel 193 265 IPR013099 -
Accr3g01879 351 Pfam Ion channel 72 152 IPR013099 -
Accr3g01879 351 Gene3D - 181 252 - -
Accr3g01879 351 PRINTS Two pore domain K+ channel signature 108 136 IPR003280 GO:0005267|GO:0016020|GO:0071805
Accr3g01879 351 PRINTS Two pore domain K+ channel signature 225 234 IPR003280 GO:0005267|GO:0016020|GO:0071805
Accr3g01879 351 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Accr3g01879 351 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Accr3g01879 351 SUPERFAMILY Voltage-gated potassium channels 63 165 - -
Accr3g01879 351 SUPERFAMILY EF-hand 281 345 IPR011992 -
Accr3g01879 351 Gene3D - 253 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01879 Accr-Chr3 26240557 26243153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01879 58 349 Ion Channels AT5G55630 63.356 7.09e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01879 K05389 - gmx:100777388 448.358