Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01875 ATGGCGGACTCGGATAACGATTCCGGAGGTGCTCAGAACGCGGCGAATGCAAACAGCAGCGAACATTCGCTGCGAGAGCAAGACCGGTTTCTACCAATCGCGAATGTGAGCAGGATCATGAAGAAGGCTCTTCCAGCTAATGCGAAGATCTCGAAGGACGCTAAGGAGACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGAGAGAAGCGGAAGACAATCAATGGTGACGATTTGCTGTGGGCGATGACGACGTTAGGATTTGAAGACTACGTGGAGCCGCTCAAGATATATCTCCAGAGATTCAGGGAAATGGAAGGCGAGAAGAGCGTGGCGGTGCGTGACAAGGACGGCGGTGTTGGAGGCGTGAACGCTGCCAACAGTGGCTTCGAGGGCGGAGGAGGTGGAATGTATGGTGGTGCGGGGATGATGATGCATCAGGGACACGTGTACGGTTCTGGAGGGTTTCATCCAATGGCTGTGAGTGGAGGAAGTGGTGGTCCTGTGATGGGTAAGAGTGGGCCCAGTTATCCCAGTGCCGGATCTAATGCAGGTAGGCCCAGATAG 600 0.5467 MADSDNDSGGAQNAANANSSEHSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVAVRDKDGGVGGVNAANSGFEGGGGGMYGGAGMMMHQGHVYGSGGFHPMAVSGGSGGPVMGKSGPSYPSAGSNAGRPR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01875 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr3g01875 199 MobiDBLite consensus disorder prediction 1 21 - -
Accr3g01875 199 Gene3D Histone, subunit A 17 133 IPR009072 GO:0046982
Accr3g01875 199 MobiDBLite consensus disorder prediction 1 26 - -
Accr3g01875 199 FunFam Nuclear transcription factor Y subunit B-3 19 140 - -
Accr3g01875 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Accr3g01875 199 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Accr3g01875 199 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Accr3g01875 199 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Accr3g01875 199 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr3g01875 199 SUPERFAMILY Histone-fold 27 125 IPR009072 GO:0046982
Accr3g01875 199 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01875 Accr-Chr3 26141117 26141716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01875 1 162 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.840 4.92e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr3g01875 CBFD_NFYB_HMF 1.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01875 K08065 - qsa:O6P43_013552 287.73