Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01786 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGAGGTTTATAGATGAAAGATACTCAAGGGATAATATATACCCGAGAGGTGCCTTCCACCGTGATGGTTTGGATAGGGAGGCATTTCCTCCATCAGGACCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAGGACTATTTGCTGGACAAGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATCAGCAGATTGATGCTTTCAGAGATAGGGAGGTTGACATGTATCCAGAATTTGAAAAATTTCAAGATGGCTATGCCAGCATTGAAAATTATGATGATCGAGGATATGATAAACCTGGTAGGTTTGGGGGTCATGATAGGGATGACTATGCATACGATGATTATGGCTACAGGTCTCGTGCATCCCATCATTATAGGGAGGATAGCCATGATAGGGATCTTGATCATGTCCGTCATAGTCACGATTCTGATTATGGGAAAGGTAGAAGAGATGGCAATTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAAGAGGCATGAGCGTTCCCGGTCCCGTTCTCGGTCTTCGTCTCAATCTCGATCTCGATCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCTATCCTGATAGTCGGTATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAGGAGGCGTGATCATTATTCAGTGGCTCCATCCGCTACTGTTGTTGTTAAAGGTCTGTCACAAAATGCCAACGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCGTTTATTGATTTTCCTTCTGTGGGAGCTGCACGGGCAATGATGGACAAACTTGGAGATGATGGTCTTGTCGTGGATGGTAGAAGGCTTTTCTTTGAATATAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTAGTTACATCAATTTTGCCCGACGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCGGCAGATATTACTTTGTCAAATCCAACAGCCTTAGGAAAGAAAGGATCAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGACCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGAATGCCACCAAGGCTCTTGAAGCAACAAATGGAACAGCCCTCGAGAAGAACGGACAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTAGGTCCTGGATCAGGAACGTCAGGTGCTTCCCAGTCAAGTAGTCTAGCAGCTGCTGCTATTGAGGCTGCGACATTTGCTCAGCAGTATGATTCTGTCGGATGGGCTCCTAAAGAATACAATCCAGATGATAAACAATCTACTGGTCAAGAGCAAACTGGGGCAGCTCAGACAGATGCATTGGCTCCTCAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATATCCCTTGCACTGATCAAACTGAGAATACAGCTCCTAATAATCAGTCTGAACCTTCCAAGGTGTCTGGCAGTTCCAGCAGTAAAAAAGTTATTATTTCTGCACCTGCTACTACTGTTACGTCTGCTGAGAAGCCAGCTTCTTTGGCAGACGCAGTTCAAGCTGCTGCAACTGCTGCCATTGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAAGAGATAAAGCTTGCTTCCAAGAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTTGAAGACAATCACCAATCCACATCCATTGATGATAGGTCTTCTGGATATCCCACAAAGAGCAAGTTCAAGAATGATTTTGCAGATACAAGGGAGAATAATGCGTCCACTTCAGGGATTCCCACTGCCCCTGCTTCTCAGGCTGTTGCTTCTGATTCTCAGGTTCAGCCACGACCTATTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATTAGAGGCTCTGGAAGAGGGATCATTAAATCTGATAGTTTATACTCAGGACCTACAGCTTTAGCTACTGCATGTGCATCAGGAGCGTCTTCATCTAGTGTAGATGCTCCAACAGTTGCAACTCCATTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACTCCTGCCACTGGTGGAAGTGGCCGAAGAAGGTTTTCTGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCGCAAACAACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGTTGGCTGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAGTAAGATTGCTTAA 2868 0.4484 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFIDERYSRDNIYPRGAFHRDGLDREAFPPSGPAVGHWSESKRRGYDEDYLLDKESRRLQRPYYDSYQQIDAFRDREVDMYPEFEKFQDGYASIENYDDRGYDKPGRFGGHDRDDYAYDDYGYRSRASHHYREDSHDRDLDHVRHSHDSDYGKGRRDGNWRRRESRDREHDRRYPSRERDLSPRKRHERSRSRSRSSSQSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSYPDSRYERSEKRRDREERRRDHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICSYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVENATKALEATNGTALEKNGQILRVAYAKSILGPGSGTSGASQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTDALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENTAPNNQSEPSKVSGSSSSKKVIISAPATTVTSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSGYPTKSKFKNDFADTRENNASTSGIPTAPASQAVASDSQVQPRPISNSLGGTLMGVIRGSGRGIIKSDSLYSGPTALATACASGASSSSVDAPTVATPFRTDVSALGSYATPATGGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLLAGDDLADLESGDSSKIA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01786 955 Gene3D - 410 443 - -
Accr3g01786 955 PANTHER RNA-BINDING PROTEIN 204 934 - -
Accr3g01786 955 MobiDBLite consensus disorder prediction 167 302 - -
Accr3g01786 955 Pfam OCRE domain 613 661 IPR041591 -
Accr3g01786 955 CDD OCRE_SUA_like 611 662 IPR035623 -
Accr3g01786 955 MobiDBLite consensus disorder prediction 797 830 - -
Accr3g01786 955 SUPERFAMILY RNA-binding domain, RBD 466 555 IPR035979 GO:0003676
Accr3g01786 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 548 IPR000504 GO:0003723
Accr3g01786 955 CDD RRM1_RRM2_RBM5_like 466 546 - -
Accr3g01786 955 SMART rrm1_1 309 384 IPR000504 GO:0003723
Accr3g01786 955 SMART rrm1_1 469 544 IPR000504 GO:0003723
Accr3g01786 955 MobiDBLite consensus disorder prediction 889 928 - -
Accr3g01786 955 Gene3D - 451 573 IPR012677 -
Accr3g01786 955 MobiDBLite consensus disorder prediction 586 608 - -
Accr3g01786 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Accr3g01786 955 SMART zf_4 415 439 IPR001876 -
Accr3g01786 955 ProSiteProfiles Zinc finger RanBP2 type profile. 413 442 IPR001876 -
Accr3g01786 955 MobiDBLite consensus disorder prediction 663 686 - -
Accr3g01786 955 ProSitePatterns Zinc finger RanBP2-type signature. 417 436 IPR001876 -
Accr3g01786 955 MobiDBLite consensus disorder prediction 226 250 - -
Accr3g01786 955 MobiDBLite consensus disorder prediction 771 830 - -
Accr3g01786 955 MobiDBLite consensus disorder prediction 133 155 - -
Accr3g01786 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 370 IPR000504 GO:0003723
Accr3g01786 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 535 IPR000504 GO:0003723
Accr3g01786 955 SUPERFAMILY RNA-binding domain, RBD 303 403 IPR035979 GO:0003676
Accr3g01786 955 Gene3D - 273 409 IPR012677 -
Accr3g01786 955 SUPERFAMILY Ran binding protein zinc finger-like 407 443 IPR036443 -
Accr3g01786 955 MobiDBLite consensus disorder prediction 251 302 - -
Accr3g01786 955 MobiDBLite consensus disorder prediction 167 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01786 Accr-Chr3 23688599 23694539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01786 307 532 Eukaryotic Initiation Factors Gene Family AT2G36660 25.692 3.79e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01786 K13094 - gmx:100787998 1267.68