Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01778 ATGGCGACGCTATTGAGGAAAATGTGGGAATCGGTATCTAACCGTTCTTGTTCGGGTTCGGGTTCAAATTCCAACTCGGCGGAACGCTTTTGTAGGGTACTGGATTCGCCTCTGGGTGTATTCGATCAAATTCCTTCCGATATATTGATCCAAATCCTGAAGCTTCTGGGTCCCAAAGAAGCTGCGAAGTTTACTCTTGTCTGCAAAGCATGGAGATGGTTGGCCTCCGATAACCGGCTGTGGATTTATTTCCTTCAGAATTATCAATTGGAGCCATGGGATACCATTTTTTTCGCCGAGATCAATTTGAGTTCCGGTCATCCTCTTCCAACCTTAGTCGGTCAGATGCCTCAGCTATCTTTCAAGCGTATATTTGGCCTACGAGAACAAGTTCCTGGTGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATATGACCGCCCATCAGGGCGATCGGCTACCTTCTTGGAATTCGGTAACCTCGAGTCTCCAATGTACACTAGGCTTAGACATTTTTTTGCAACTATTTATAGCAGGATGCAGGTTAAACCAAGTACTCAACCAGTTATTGTTTCTATTCCAATATGCCATTATGACGATACTGAATCTGCCAAGGCATCAAGGCGGCAACTTAAGGAGGCAATATGTGCTGCCCTCTTTGACATGCATGTTCCTGCTATTTGTGCTGTCAACCAGGCCACTTTGTCTCTGTATGCTGCAAAACAAACTTCTGGGATAGCTGTTAATATTGGTTTTCAGGTCACATCTATTGTTCCAATTCTGAATGGTAAAGTTATGCGGAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCAATCAAACTTACAGGATACCTTAAGGAGCTTATGCAACAGAACAACATGGATTTTGAATCCTTGTACACTGTTCGCACACTAAAAGAGAAACTATGCTATGTTGCTATTGATTATGAAGCTGAAAAATCAAAAGATACACGAGCATCGTTTGAAGCAGCAGGAGAAGGATGGTTTACCCTTTCAGAAGAGCGGTTTCAAACAGGAGAGATCTTGTTCCAGCCTCGTCTTGCTGGATTGCAAACAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTTGTTTTATCTGGGGGAACTGCATGTTTACCAGGTCTGGCAGAAAGGTTAGATAAGGAACTCCGTGAGTTATTTCCTCCCCAGTTGTCCAGTGGAATCAAAGTCATACCTCCTCCATATGGTGCTGATACTGCATGGTTTGGAGCGAGGACCATTGGCAATTTGAGTACCTTTCCTGGTCCCTGGTGTATAAAGAAGAAGCAGTTCCGCAAGTCTGGTCTCTCTCTCATATGA 1413 0.4459 MATLLRKMWESVSNRSCSGSGSNSNSAERFCRVLDSPLGVFDQIPSDILIQILKLLGPKEAAKFTLVCKAWRWLASDNRLWIYFLQNYQLEPWDTIFFAEINLSSGHPLPTLVGQMPQLSFKRIFGLREQVPGAVIIDGGSGYCKFGWSKYDRPSGRSATFLEFGNLESPMYTRLRHFFATIYSRMQVKPSTQPVIVSIPICHYDDTESAKASRRQLKEAICAALFDMHVPAICAVNQATLSLYAAKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGAIKLTGYLKELMQQNNMDFESLYTVRTLKEKLCYVAIDYEAEKSKDTRASFEAAGEGWFTLSEERFQTGEILFQPRLAGLQTMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELRELFPPQLSSGIKVIPPPYGADTAWFGARTIGNLSTFPGPWCIKKKQFRKSGLSLI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01778 470 Gene3D - 239 437 - -
Accr3g01778 470 SMART fbox_2 44 84 IPR001810 GO:0005515
Accr3g01778 470 SUPERFAMILY Actin-like ATPase domain 249 469 IPR043129 -
Accr3g01778 470 PANTHER ACTIN 176 466 IPR004000 -
Accr3g01778 470 SMART actin_3 132 462 IPR004000 -
Accr3g01778 470 SUPERFAMILY F-box domain 40 100 IPR036047 GO:0005515
Accr3g01778 470 Pfam Actin 181 468 IPR004000 -
Accr3g01778 470 Pfam F-box-like 42 81 IPR001810 GO:0005515
Accr3g01778 470 CDD F-box_AtARP8-like 41 84 - -
Accr3g01778 470 Gene3D Actin; Chain A, domain 4 282 365 - -
Accr3g01778 470 CDD NBD_sugar-kinase_HSP70_actin 135 279 - -
Accr3g01778 470 Gene3D - 36 107 - -
Accr3g01778 470 Gene3D - 178 467 - -
Accr3g01778 470 SUPERFAMILY Actin-like ATPase domain 133 254 IPR043129 -
Accr3g01778 470 ProSiteProfiles F-box domain profile. 38 84 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01778 Accr-Chr3 23593269 23600833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01778 181 470 Cytoskeleton Gene Families AT3G12110 31.773 5.15e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01778 K16616 - qsa:O6P43_013433 738.028