Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01772 ATGGCAGAGGGTTGCGCCACCAACACATATGAAGAGGCTCGGAAGCAACGGCTTGAAGAAAACAGAAAAAGATTTGAGGATCTGGGGATTTTGAAGATTTCAAAAAATTTATCTGCAATTGTCACACCAGAGAAGAAGGCTCCTCCGCAACGTCGACCAAAACAAAAATCAAATAGTAATGATGTCGTGGAACCGAGACGCTCTTCTCGTGTGCGAAATTCTGTTCTTTCATATCATGAGGAGTTCATGGAGGACCTTCCATCTACGCGGAAGAGGTCGAGGTCAAGGTCGTCTTCATCGTCATGGGGAAGTTATATTGCAAGGCCACTAGTTGAAATCAAAGAGGCCACAGATGAAGAAAGAAATCGTGCTTTCATGGCTGCAGAAAAACTTCTGAGCAACTTGCAGACTTCGAATCCAGCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGTTGCTTTTGGTTGGGTCTCCCTTCTAGATTTTGCCAAGACCATCTTCCGAAGACTGCATGCGACATGATTTTAGAGGATGAAAATGGCTCAGAATTTGAGGCTGTTTTCCTTGGCAATAGAACTGGGATGAGCGGAGGCTGGAGAGGATTTGCATTGGATCATAAGTTGGATGATGGCGATGCACTTATTTTTGAATTAGTTGAACCTACGAGATTTAAGATTTACATTGTCAGAGCCTTTCCAGAATCAGCTGAATATGGGCAGGAGATTTTGGATGAACAAGCTGATACTTGTGCAACCAAGAAGCACAAATCACAATCGAACAAGACAGATATTCTTAAAACTAAAGAATCTGCAAATTCTCAGGAACACACAGCAGAAGATAACATTGGCAATGAAATCAAGCCACAAGGGAGGAAAAATAGGTTTTCTCAGAGAAAATCTCAGAAAGAATCCAAAGATTGTAAACTGCTTCCTTCTGATGGTTCAGTAAAGGAAGAGAATGTTGAAGAAGAGGAAAAATCTACTACTGAGAAAGCGAATTCTCAAGCAAACAAGAGAAAGTCAAAACGTGGTAAACGAAATTGA 1047 0.4126 MAEGCATNTYEEARKQRLEENRKRFEDLGILKISKNLSAIVTPEKKAPPQRRPKQKSNSNDVVEPRRSSRVRNSVLSYHEEFMEDLPSTRKRSRSRSSSSSWGSYIARPLVEIKEATDEERNRAFMAAEKLLSNLQTSNPAFIKSMVRSHVYSCFWLGLPSRFCQDHLPKTACDMILEDENGSEFEAVFLGNRTGMSGGWRGFALDHKLDDGDALIFELVEPTRFKIYIVRAFPESAEYGQEILDEQADTCATKKHKSQSNKTDILKTKESANSQEHTAEDNIGNEIKPQGRKNRFSQRKSQKESKDCKLLPSDGSVKEENVEEEEKSTTEKANSQANKRKSKRGKRN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01772 348 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Accr3g01772 348 SUPERFAMILY DNA-binding pseudobarrel domain 135 231 IPR015300 -
Accr3g01772 348 Pfam B3 DNA binding domain 142 230 IPR003340 GO:0003677
Accr3g01772 348 MobiDBLite consensus disorder prediction 251 288 - -
Accr3g01772 348 Gene3D - 116 233 IPR015300 -
Accr3g01772 348 Coils Coil 8 28 - -
Accr3g01772 348 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 232 IPR044837 -
Accr3g01772 348 CDD B3_DNA 140 231 IPR003340 GO:0003677
Accr3g01772 348 SMART B3_2 142 233 IPR003340 GO:0003677
Accr3g01772 348 MobiDBLite consensus disorder prediction 297 338 - -
Accr3g01772 348 MobiDBLite consensus disorder prediction 251 348 - -
Accr3g01772 348 MobiDBLite consensus disorder prediction 47 70 - -
Accr3g01772 348 MobiDBLite consensus disorder prediction 38 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01772 Accr-Chr3 23495201 23499092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01772 10 232 B3 DNA Binding Superfamily AT5G58280 50.598 1.73e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr3g01772 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01772 - - pcin:129303902 489.189