LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g01697	ATGCGGCCAGAACTGCAACAAAAGCCTCTTTTCTTCTTCTTCTTCTTCATCTTCTTGAACTTCATACTCTGGTCATGGTTGACACTTGACGGCGTCGTTTCAGACCCTCAGACCAATCTGGTGCGGCTATGGTGTGACCAGAACGGTGACAACGATGGATCGATCATGAAGGAGATCTTAAACGAAACGTTTGGAGACCTCAGAGCTCAGATCAAAGACCAAAACAAACAATTCGCCATCGCTCAAGCAGTGAGGGCTAACATGCCCGTTTTTGGCCTCTTTCAGTGCAGAAACTATCTCTCCATTGCCGACTGCCTTGCTTGCTTCGATGTCGCCGCCGTAAACATCCGCAACTGCTCCAAACAGGCATACGGTTCCCGACTCGTCTACGATGGCTGCTTCCTCCGGTACGAGAGCAGTCAACAGTATGATCTTGCCACCGAAACTGCTTGGGGCAACATAAGATGTGGGAATCAGACAATAATAGATTCCTCAACGCTTGCTTCAACTGTCCAACAAGCGTTAACGAATCTAAACACAGCAACACCAAAAATGGCTGGTAATTTTTATGCAGCCACTAAAACGCCTGTGCCTAATAGTAATAATGGTTTGAACATTTATGCGATTGCTCAATGTGTTGGGACTCTCTCACAAAGTGGGTGTCAGACTTGCATCAACTCTGCATCAGCAAGATTTCAGACTTGTCTTACAAACTCAAATTCTGAGAGTTACGATACTGGCTGCTTCATGAGATACTCAACCTCTTCCTTTTTTGCTGATAATCAAACCACTGATATTAAACCCTTCTTGAAACAGCAAGGTTCATCAAGCAACAATAATAAGGGGGTCATCATTGGTATTGTTATTGGATGTGTAGTGTTTGTTTTGTTCCTCCTTATTGCGTTATTTATCTGGATTAGACCACGAAAAAGCCAAAAGAGGGTTCCTAGAGGAGACATGACTGGAATAAGCAAGTTGAAAGCCCCAGTTAATTACAATTATAGGGATTTAAAGTCTGCAACAAAAAATTTCAGTTCCGAAAATAAACTTGGAGAAGGAGGATTTGGTTCAGTTTATAAGGGCACTCTGAAGAATGGGAAAGTAGTTGCAGTGAAGAAATTAACTATACGACAATCGAAGAGGATGGAGGAAGAATTTGAGAGTGAAGTGAGGCTTATAAGTAATGTTCATCATCGCAATCTTGTTCGACTTCTTGGATGTTGCAGTAAAGGCAAGACGAGGATTCTGGTCTACGAATACATGGAAAAGACCAGCCTTGACAGATTTTTATTTGGAAAAAAGAAAGGTTCTCTTAATTGGAAACAACGATACGATATAATTTTAGGAACAGCTAGAGGCTTGACTTATCTACATGAGGAATTTCATGTTCGTATCATACATAGAGATATCAAGACTAACAACATCCTGTTAGATGATGATTTGCAACCTAAAATTGCTGATTTTGGTTTAGCAAGGCTCTTACCAGAGGAAAAATCTCATCTTAGCACAAGATTTGCAGGAACATTAGGATATACAGCACCAGAGTATGCAATGCATGGCCAACTATCAGAAAAAGCTGATGTCTATAGCTACGGTGTCGTTGTCCTAGAAATCATTAGTGGTCGAAGGAACAATCAATTAAGCATCGGTGGTGCTGCTGAGGGCGAGTTCCTCCTTCAAAAAGCATGGAAACTATATCAAAGAGGGACGCACTTAAGCTTGGTGGATGATACATTAGACCCTAATGAGTACGATGAAGAAGAAGTGAAGAAAATTATAGAGATTGGTTTACTTTGCACCCAAGCATCTGCAGAAATCAGGCCAACAATGTCTCAAGTCGTTGGTTTGCTACAACAGGGAGGTTTAGCAGAGGATATAAGGCCCACTATGCCTCTTTTTATTGAAATTGATTAG	1914	0.4154	MRPELQQKPLFFFFFFIFLNFILWSWLTLDGVVSDPQTNLVRLWCDQNGDNDGSIMKEILNETFGDLRAQIKDQNKQFAIAQAVRANMPVFGLFQCRNYLSIADCLACFDVAAVNIRNCSKQAYGSRLVYDGCFLRYESSQQYDLATETAWGNIRCGNQTIIDSSTLASTVQQALTNLNTATPKMAGNFYAATKTPVPNSNNGLNIYAIAQCVGTLSQSGCQTCINSASARFQTCLTNSNSESYDTGCFMRYSTSSFFADNQTTDIKPFLKQQGSSSNNNKGVIIGIVIGCVVFVLFLLIALFIWIRPRKSQKRVPRGDMTGISKLKAPVNYNYRDLKSATKNFSSENKLGEGGFGSVYKGTLKNGKVVAVKKLTIRQSKRMEEEFESEVRLISNVHHRNLVRLLGCCSKGKTRILVYEYMEKTSLDRFLFGKKKGSLNWKQRYDIILGTARGLTYLHEEFHVRIIHRDIKTNNILLDDDLQPKIADFGLARLLPEEKSHLSTRFAGTLGYTAPEYAMHGQLSEKADVYSYGVVVLEIISGRRNNQLSIGGAAEGEFLLQKAWKLYQRGTHLSLVDDTLDPNEYDEEEVKKIIEIGLLCTQASAEIRPTMSQVVGLLQQGGLAEDIRPTMPLFIEID	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g01697	637	CDD	STKc_IRAK	350	619	-	-
	Accr3g01697	637	ProSiteProfiles	Gnk2-homologous domain profile.	149	257	IPR002902	-
	Accr3g01697	637	Gene3D	Phosphorylase Kinase; domain 1	309	420	-	-
	Accr3g01697	637	ProSitePatterns	Protein kinases ATP-binding region signature.	350	373	IPR017441	GO:0005524
	Accr3g01697	637	SUPERFAMILY	Protein kinase-like (PK-like)	327	617	IPR011009	-
	Accr3g01697	637	ProSiteProfiles	Protein kinase domain profile.	344	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01697	637	SMART	serkin_6	344	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01697	637	Coils	Coil	57	77	-	-
	Accr3g01697	637	ProSiteProfiles	Gnk2-homologous domain profile.	38	142	IPR002902	-
	Accr3g01697	637	FunFam	Cysteine-rich receptor-like protein kinase 2	421	625	-	-
	Accr3g01697	637	Pfam	Salt stress response/antifungal	52	139	IPR002902	-
	Accr3g01697	637	Pfam	Salt stress response/antifungal	160	254	IPR002902	-
	Accr3g01697	637	Gene3D	Transferase(Phosphotransferase) domain 1	421	625	-	-
	Accr3g01697	637	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Accr3g01697	637	Pfam	Protein tyrosine and serine/threonine kinase	347	615	IPR001245	GO:0004672\|GO:0006468
	Accr3g01697	637	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	94	634	-	-
	Accr3g01697	637	FunFam	Cysteine-rich receptor-like protein kinase 2	309	420	-	-
	Accr3g01697	637	Gene3D	-	37	141	IPR038408	-
	Accr3g01697	637	Gene3D	-	149	257	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g01697	Accr-Chr3	21738740	21742875	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g01697	5	635	Receptor kinase-like Gene Family	AT1G70520	36.180	1.75e-120	370

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr3g01697		PK_Tyr_Ser-Thr	2.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g01697	-		-	gmx:100813585	729.169