LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g01688	ATGCTTCAACCTCATCATCATCTTCTTCCCTTATTTACCTTCATATTCTGCTCATGCTGGGTCCTCAACCGTGTCGTTTCAGACCCCCAGATCTATTTTTTGACAAAAAGGTGCAACCCATACTATGAATTCCTTGTGTCCAACGTCACCCTCTTCGATGAAAACATAAACTCAACGTTGCGAGACATCAGAGAGCAGATCGGTGGCCAAAACAAGCACTTCGCCACCGCAGAGGGAGCTGCCAGTGGCGGAAACACCGTCTCCACACTTTTTCAATGTAGGAGTTACCTCTCAACTGCCGATTGTGTCGCCTGCTTTGACGTTGCTGCGACTCAAATTCTCAGCTGTGCTCCCGGCGACCCTGGCGGCCACGTTGTCTATGATGGATGCTATCTGAGGTACGACATTAGTAGAGCTTTCTTTGGTGATACAACACAGTCTGTCAATAGTGCATCATGTGGGAATCAGACTACAGATCAACCCGCTGCTGTATTTACCTCAGCTGTTCAACAAATGCTAATGAATCTTCAAAGAGCAACACCCAAAATCACTGGCTTCTCCGTAGCCACAAAGACACAAGTTCCTAATAATGGTCCCACTATTTATGGATTTGCTCAATGTATTGAAACTATCTCACAAAGTGACTGCAAGGATTGCTTGAATGCTTCGTACAATAATATGCAGACTTGCCTTCCCAATTCTGATGGTAGGGCTTATGCTAATGGCTGTTTCTTGAGATATTCCACCACTTCCTTCTTTCCTGAAAATCAGACCATTGATATCACACCATCCTTCAAGCAAGGTTCAAGCAATAAGGGAGCTATTATAGGTGGAATTATTGGAGGCGTGGTAGCTCTTGTTTTGACCTTCCTTGCATTATTTGTCTGGATTAGACGACTGAAAAGGCCTAAGAGGGCTCCTAGAGAAGACATAATTGGAGCGAGCAAGTTGAAAGGTCCAGTGATTTATAATTATAATGACTTGAAGGCTGCAACCAAGAATTTCAGTGAAGAAAATAAACTAGGAGAAGGGGGATTTGGTGTTGTATACAAGGGCACTTTGAAGACCGGAACAGAAATTGCAGTCAAGAAATTAACATTTCAGCATTTCAATAGGATGGAGGAGGACTTTGAAAATGAAGTGAAGCTTATAAGTAATGTTCATCATCGGCATCTTGTTAGGCTCTTGGGATATTGTATTCATGGCAAGAATAGAATCCTTGTTTATGAATACATGAGAAATAGCAGTCTTGACGTGTTCTTATTCGGTAAAATGAAAGGCTCGCTCAACTGGAAGCAAAGATATGATATAATTTTAGGCATGGCAAGGGGACTAGCCTACTTACATGAGGAATTCCACGTTTGCATCATACATAGAGATATAAAGCCTAACAACGTTCTCTTGGATGAGGATCTTCAGCCTAAAATTGCTGATTTTGGATTGGCAAGACTTCTACCTGAGGATAAAACTCATCTTAGCACCAAATTTGCAGGAACATTAGGATACACATCACCAGAATATATAATTCATGGCCAATTATCTGAGAAGACTGATGTTTATAGTTATGGTGTTGTAATCTTGGAGATTATCGGTGGCCAAAGAAGTAAGGAACTTAGAGTCGATGGTGATATCGAAGGCGAATTCCTCCTTCAGAAAGCTTGGAAGCTATACGAAAAAGGTATGCATGTGGAGCTAGTGGACGAAACCTTAGACCCTAGTGATTATGATGTGGAAGAAGTGAAGAAAGTCATAGAGGTTGGTTTGCTTTGCACCCAAGCATCCGCTGAAATAAGGCCAACAATGTCTGAAGTAATTGTCTTGCTCCAAAACAAGGACTTGTTAGAGAATAGGAGACCCACAATGCCTGTCTTGATTGAACCAAATTAG	1887	0.4192	MLQPHHHLLPLFTFIFCSCWVLNRVVSDPQIYFLTKRCNPYYEFLVSNVTLFDENINSTLRDIREQIGGQNKHFATAEGAASGGNTVSTLFQCRSYLSTADCVACFDVAATQILSCAPGDPGGHVVYDGCYLRYDISRAFFGDTTQSVNSASCGNQTTDQPAAVFTSAVQQMLMNLQRATPKITGFSVATKTQVPNNGPTIYGFAQCIETISQSDCKDCLNASYNNMQTCLPNSDGRAYANGCFLRYSTTSFFPENQTIDITPSFKQGSSNKGAIIGGIIGGVVALVLTFLALFVWIRRLKRPKRAPREDIIGASKLKGPVIYNYNDLKAATKNFSEENKLGEGGFGVVYKGTLKTGTEIAVKKLTFQHFNRMEEDFENEVKLISNVHHRHLVRLLGYCIHGKNRILVYEYMRNSSLDVFLFGKMKGSLNWKQRYDIILGMARGLAYLHEEFHVCIIHRDIKPNNVLLDEDLQPKIADFGLARLLPEDKTHLSTKFAGTLGYTSPEYIIHGQLSEKTDVYSYGVVILEIIGGQRSKELRVDGDIEGEFLLQKAWKLYEKGMHVELVDETLDPSDYDVEEVKKVIEVGLLCTQASAEIRPTMSEVIVLLQNKDLLENRRPTMPVLIEPN	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g01688	628	Gene3D	-	145	252	IPR038408	-
	Accr3g01688	628	Gene3D	-	32	138	IPR038408	-
	Accr3g01688	628	ProSiteProfiles	Protein kinase domain profile.	335	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01688	628	ProSitePatterns	Protein kinases ATP-binding region signature.	341	364	IPR017441	GO:0005524
	Accr3g01688	628	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	626	-	-
	Accr3g01688	628	CDD	STKc_IRAK	341	610	-	-
	Accr3g01688	628	Pfam	Salt stress response/antifungal	49	135	IPR002902	-
	Accr3g01688	628	Pfam	Salt stress response/antifungal	153	249	IPR002902	-
	Accr3g01688	628	ProSiteProfiles	Gnk2-homologous domain profile.	33	139	IPR002902	-
	Accr3g01688	628	Gene3D	Transferase(Phosphotransferase) domain 1	412	620	-	-
	Accr3g01688	628	ProSiteProfiles	Gnk2-homologous domain profile.	147	252	IPR002902	-
	Accr3g01688	628	SMART	serkin_6	335	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01688	628	FunFam	Cysteine-rich receptor-like protein kinase 2	301	411	-	-
	Accr3g01688	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Accr3g01688	628	Gene3D	Phosphorylase Kinase; domain 1	301	411	-	-
	Accr3g01688	628	FunFam	Cysteine-rich receptor-like protein kinase 2	148	252	-	-
	Accr3g01688	628	FunFam	Cysteine-rich receptor-like protein kinase 2	412	616	-	-
	Accr3g01688	628	SUPERFAMILY	Protein kinase-like (PK-like)	319	615	IPR011009	-
	Accr3g01688	628	Pfam	Protein kinase domain	336	536	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g01688	Accr-Chr3	21345809	21364866	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g01688	7	612	Receptor kinase-like Gene Family	AT1G70520	38.226	1.94e-121	372

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr3g01688		Pkinase	1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g01688	-		-	pcin:129300003	774.237