LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g01686	ATGCTTCAACGTACTAATCTCCATCTATTATTTGCCTTCTTCATATTCTGCTCATTCTGGACCCTTCACGTCGTCGTTTCAGACCCACAGACCCATCTTGTGAGCAGATTCTGCAACCCATACGACGCACTGCAAGTGTCCAACATCTCCATGTTCGATGAAAACCGAAACGCAACGTTTCGAGACATCAGAAATCAGATTAGTGGCCAAAACAAGTACTTTGCCACTGCACAGCAAGCCAATGGAGGAAATTCTGTTGCCACTCTTTTTCAATGCAGAAACTATCTCACCATCGCCGACTGTGTCGCCTGCTTCGACTCGGCTGCCGTGAAAATTCTCAGCAGTTGCGCCGCTGGGTCCCCTGGTGGTTTTGTCGTGTACGACGGCTGCTTCCTCAGGTATGATGCCAGCAACTCTTTCTTTCTCGAGACAACGCCGTCAATTAACAGCGTAGCATGTGGAAACCAGACTGTTGACGGAGAAGTCACCGCATTTGACTCAACAGCACAACAAGCGCTAACGAATCTCCAAACTACAACACCTACAACCACTGGTTTCTTTACAGCCACAAAGATGCAAGTCCCTAATAATAATAATCAAACTATTTATGCTTTTGCTCAATGTATTGGAACTATCACTCAGAATCTGTGCCTCAGTTGCTTGAACGCTGCGTATAGCAATTTGCAGACTTGTTTTCCAAATTCTGATGGTAGGGCTTATGCCAATGCCTGCTTTATGAGATACTCGACCACTTCCTTCTTTCCTCCTAACCAGACCTTTCATATTCTGCAACCCTTGATCAAAAAAGGTTCAAATAATAAGGGGGCCATTATAGGTGTTGTTGGAGGTGTAGCATTTGTTTTGGTCCTCCTTGCACTATTAGCTTGGATTAAACGACCAAAAAGGCATGAAAGACCAGTTCCTAGAGGAGACATATCTGGAGTAAGTAAGTTGAAAGGACCAACTATTTTTAGTTATGGAGAGTTAAAGATTGCTACTAAAAGTTTCAGTGAAGAAAATAAACTTGGAGAAGGCGGATTTGGTGCTGTATATAAGGGTACTTTGAAGAATGGGAAAGTAGTTGCTGTAAAAAAATTAACCTTACGCCAGTCTAAGAAGGTGGATGAAGAATTTGAGAGTGAAGTGAAGCTTATAAGCAATGTTCATCATCGGAATCTTATTCGGCTTCTTGGATGTTGCAGTAAAGGCGATAAGAGAATTCTTATTTATGAATATATGAAAAACACCAGTCTCGATAAATTCTTATTCGGTAAAAATAGAGGTTCTCTCAATTGGAAGCAACGATATGAAATACTTTTAGGAACAGCAAGGGGTTTGGCTTATCTACATGAAGAATTTCATGTATGTATCATACATAGAGATATAAAGACTAACAACATTCTCTTAGATGATGATCTCCAACCAAGAATTGCTGATTTTGGCTTAGCAAGATTTTTACCCGATGAAAAATCTCATCTCAGCACAAAGTTTGCTGGAACATTAGGATACACAGCACCAGAATATGCAATTCACGGTAAATTATCAGAAAAAGCTGATATTTATAGTTATGGCGTTGTCGTCCTTGAAATTATCAGTGGCCAACAAAGTGGTAAATTGAATATGCATGGTGATAGTGAAGGCGCATTCCTCCTTCAAACAGCTTGGAAACTATATGAGAGAGGCTCGCACATAGAGTTGGTGGACGATACCTTGGACCCTAATGAGTATAATACAGAAGAAGTGAAGAGAATCATAGAGATTGGTCTGCTTTGCACCCAAGCATCTGCTGAGTTAAGGCCATCAATGTCTGAAGTAATTGTTTTGCTTCAAGGAAATGGCTTATTGGAGAATATGAGACCCACCATGCCTATCTTGATTGAAACAAATTAG	1890	0.4085	MLQRTNLHLLFAFFIFCSFWTLHVVVSDPQTHLVSRFCNPYDALQVSNISMFDENRNATFRDIRNQISGQNKYFATAQQANGGNSVATLFQCRNYLTIADCVACFDSAAVKILSSCAAGSPGGFVVYDGCFLRYDASNSFFLETTPSINSVACGNQTVDGEVTAFDSTAQQALTNLQTTTPTTTGFFTATKMQVPNNNNQTIYAFAQCIGTITQNLCLSCLNAAYSNLQTCFPNSDGRAYANACFMRYSTTSFFPPNQTFHILQPLIKKGSNNKGAIIGVVGGVAFVLVLLALLAWIKRPKRHERPVPRGDISGVSKLKGPTIFSYGELKIATKSFSEENKLGEGGFGAVYKGTLKNGKVVAVKKLTLRQSKKVDEEFESEVKLISNVHHRNLIRLLGCCSKGDKRILIYEYMKNTSLDKFLFGKNRGSLNWKQRYEILLGTARGLAYLHEEFHVCIIHRDIKTNNILLDDDLQPRIADFGLARFLPDEKSHLSTKFAGTLGYTAPEYAIHGKLSEKADIYSYGVVVLEIISGQQSGKLNMHGDSEGAFLLQTAWKLYERGSHIELVDDTLDPNEYNTEEVKRIIEIGLLCTQASAELRPSMSEVIVLLQGNGLLENMRPTMPILIETN	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g01686	629	Pfam	Salt stress response/antifungal	160	250	IPR002902	-
	Accr3g01686	629	Pfam	Salt stress response/antifungal	47	135	IPR002902	-
	Accr3g01686	629	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Accr3g01686	629	Gene3D	Transferase(Phosphotransferase) domain 1	413	617	-	-
	Accr3g01686	629	FunFam	Cysteine-rich receptor-like protein kinase 2	301	412	-	-
	Accr3g01686	629	SUPERFAMILY	Protein kinase-like (PK-like)	317	609	IPR011009	-
	Accr3g01686	629	Gene3D	Phosphorylase Kinase; domain 1	311	412	-	-
	Accr3g01686	629	SMART	serkin_6	336	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01686	629	Pfam	Protein tyrosine and serine/threonine kinase	339	607	IPR001245	GO:0004672\|GO:0006468
	Accr3g01686	629	Gene3D	-	31	139	IPR038408	-
	Accr3g01686	629	Gene3D	-	147	253	IPR038408	-
	Accr3g01686	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Accr3g01686	629	FunFam	Cysteine-rich receptor-like protein kinase 2	413	617	-	-
	Accr3g01686	629	CDD	STKc_IRAK	342	611	-	-
	Accr3g01686	629	ProSiteProfiles	Gnk2-homologous domain profile.	146	253	IPR002902	-
	Accr3g01686	629	ProSiteProfiles	Protein kinase domain profile.	336	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr3g01686	629	ProSitePatterns	Protein kinases ATP-binding region signature.	342	365	IPR017441	GO:0005524
	Accr3g01686	629	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	89	627	-	-
	Accr3g01686	629	FunFam	Cysteine-rich receptor-like protein kinase 2	148	253	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g01686	Accr-Chr3	21275242	21284892	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g01686	21	610	Receptor kinase-like Gene Family	AT1G70520	38.372	1.49e-121	373

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr3g01686		PK_Tyr_Ser-Thr	5.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g01686	-		-	gmx:100813585	731.48