Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01660 ATGGCACCAGTTTCGTTTCCACCAGGATTCAGATTCCACCCAACAGATGAAGAGCTCGTGGCTTACTATCTGAAAAGAAAGATTAATGGCCTCAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTCTACAAGTGCGAACCATGGGACTTGCCAGGGAAATCTCTGTTACCAGGGAAAGACTTGGAGTGGTATTTCTTCAGTCCAAGGGACAGGAAATATCCCAACGGATCAAGAACAAACAGAGCTACGAGATGTGGGTATTGGAAGGCGACAGGTAAAGATAGGAAAGTAAATTCACAGAGTAGAGCAGTGGGCATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCCCCTCATGGCTCTCGTACTGGTTGGGTCATGCACGAGTATCGTCTTCACGAACGAGAATGTCAACCTGCGTCTTCTGCCATGCAGGAGGCATATTCTCTCTGTCGAGTCTTCAAGAAGAGCGCGGTGATAAGTCCAAAGGTAGAAGAGGAGTACGCAAGGAGCAGTCATAATAATGGGAATTATCATCATCAGTATCGTTATCAGCAGCCACAGCAGATGGGTAGTGATCAAACGTCATCCACCATTAATAATGAGCTTAATTACAGTGAGGGAAGAGGAGGCGAAGACTTGGACAGCTCAAATAATTACTTGATGATGCCTCTTCATGATTCAGCCTACATGCACCACCCAAATAATGGGACAACATTCAACAGTGTCAATAATAATAATAATAATCCAAGTTGGTCTCACTTCTTGTCTGATGATCCTTCTTTGTTAAGCCTTCCGACAACTTCTTTATTTCCCAACTATGCACCCATATCCTATCCTCCCTCCAAGGTAGACGTAGCTTTAGAGTGTGCAAGGATGCAGCATAGGTTCAGTATGCCTCCATTGGAGGTGGAGGACTTCCCTCAAGTTGGAATTCCTGACCTGAAGATGCCACAACAACCTCATCATCATCATCATTCTGGGGCCATTATTGGAAGCAGAACTACTGAAACCGATATTTTGCAGGAGATTCTATCAGTAGCTCATGCTTCTCAGGAACTCATTAATCACCCCACAAACTATTCACCCGCCACATTGGGCGGCGGCAACAGCAACGAAAACTATGCTGCTCATGAAGAAGAAAATGATGACTTCACTTTCATGGTAGGAAGAGGAAGTGGTGATCAGAACTATAACTACAACCACCAGGTGATGAGTGACTTGAGGTCCATGATGAGAGGCATTAATAATGATACTACTACTACTACATGGGAGGATCAGAACACAGCCAGGTCAATAGAGATTTCAGATCTGGATGATGAGTTCAAGGCAGAGAGGATGGTAGAGAACTTGAGATGGGTTGGAATGTCAAGCAAAAATATGGACAAGAGCTTTATGGAAGATCAAAAGATTGTTCCTATTGAGGATATTACAAATTTCCAAATAAACAAGGAAGACAATGAGTTGCAAGCAGAATCTGTGCAACATCAAAGCAACAACATGAGTGACTTCTCATTGGGATTCATCAGTTATGATGAACCAAATGAGAACTTCATAGATGAAGGTACCCCCATGGATGACTATTCAAGCTCTCCAAGCTGCTTTGAGGTTGTGGAGGAAGTAAAAGTCAGCCATGGAATGTTTGTGGCAACTCGCCCAGCAGCCGACACATTCTTTCATCAGATAGTCCCTTCACAAACCCTCAAGGTTCATCTCAACCCAGTAATGGCAAATAGCACTAATCTCTCAGTAGAAAATGCAGAAATAGCACAGACAGATTCAAAGAGAATGGAGAAGCAAGGGTCCTCCTTCACAAAACTGAGAGACTATGTGATGGGAAAGCTAATAATGAAGCCTTCAAAGACAGCTACTAGTGCTATTATGTTCATATTTGCAATTCTCTTGATGCATTGTGCTTCATACTTGGGGGAGCATGCACAAATCCTGAAACTAGATCAGGAAAATGAAGATGTCAAAGACAAATATTGGTCTGGTGCAATAAGCATGAAGAAGAAATATTCCTCATGGACCGAGAAAGAAAGGGTTTGGTTTGTTGGTATCAAAAGTGGAAGAGGGTTTGGTGTGGTGTTGAAGAAGGTAGGGATTTTCCTTACAATTTCTTTGGCCCTTTGCACCATGTGGGCTAACCACATCACAGTTGATTAA 2169 0.4297 MAPVSFPPGFRFHPTDEELVAYYLKRKINGLKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATRCGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLHERECQPASSAMQEAYSLCRVFKKSAVISPKVEEEYARSSHNNGNYHHQYRYQQPQQMGSDQTSSTINNELNYSEGRGGEDLDSSNNYLMMPLHDSAYMHHPNNGTTFNSVNNNNNNPSWSHFLSDDPSLLSLPTTSLFPNYAPISYPPSKVDVALECARMQHRFSMPPLEVEDFPQVGIPDLKMPQQPHHHHHSGAIIGSRTTETDILQEILSVAHASQELINHPTNYSPATLGGGNSNENYAAHEEENDDFTFMVGRGSGDQNYNYNHQVMSDLRSMMRGINNDTTTTTWEDQNTARSIEISDLDDEFKAERMVENLRWVGMSSKNMDKSFMEDQKIVPIEDITNFQINKEDNELQAESVQHQSNNMSDFSLGFISYDEPNENFIDEGTPMDDYSSSPSCFEVVEEVKVSHGMFVATRPAADTFFHQIVPSQTLKVHLNPVMANSTNLSVENAEIAQTDSKRMEKQGSSFTKLRDYVMGKLIMKPSKTATSAIMFIFAILLMHCASYLGEHAQILKLDQENEDVKDKYWSGAISMKKKYSSWTEKERVWFVGIKSGRGFGVVLKKVGIFLTISLALCTMWANHITVD 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01660 722 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 232 - -
Accr3g01660 722 MobiDBLite consensus disorder prediction 187 214 - -
Accr3g01660 722 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Accr3g01660 722 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Accr3g01660 722 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Accr3g01660 722 FunFam Nac domain-containing protein 86 15 160 - -
Accr3g01660 722 MobiDBLite consensus disorder prediction 187 206 - -
Accr3g01660 722 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01660 Accr-Chr3 20561730 20566762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01660 1 640 NAC Transcription Factor Family AT1G65910 43.405 1.50e-154 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr3g01660 NAM 4.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01660 - - pcin:129299856 1097.42